Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4 170 4e-37 seq1 141 2e-28 seq5 91.5 3e-13 >seq4 Length=4180124 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| || ||||| || || ||||| || || | ||||| | ||||| Sbjct 22740 AGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCC 22681 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||||||||| || || ||||| ||||||| || ||||||||| Sbjct 22680 TCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 22621 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || || |||||||| || || ||| Sbjct 22620 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGGGTAATGGTC 22561 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||| || || | |||||| Sbjct 22560 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 22529 Score = 168 bits (186), Expect = 2e-36 Identities = 152/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||||||||| || ||||| || |||||||| || || | | ||| | |||||| Sbjct 23242 AGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATCC 23183 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| || |||||||| |||| || ||||||||| Sbjct 23182 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 23123 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || || ||||| |||||||| ||| Sbjct 23122 TGGATCTTCGCCTTAACGTTGTCGATAGTGTCGGACGACTCGACCTCCAGAGTGATGGTC 23063 Query 211083 TTTCCCGTGAG 211093 ||||| ||||| Sbjct 23062 TTTCCAGTGAG 23052 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||||||||||||||||||||| || |||||||| || || | ||||| Sbjct 22978 ACGAAGACGAAGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 22919 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || |||||||| || ||||| || || || || ||||| || || | || Sbjct 22918 GCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCC 22859 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || ||||| || |||||||| || |||||||| || Sbjct 22858 CTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCAAG 22799 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| ||||| | ||||| || || | |||||| Sbjct 22798 AGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 22757 Score = 131 bits (144), Expect = 4e-25 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || || | |||||| | || || || ||||||||||| |||||||| || || || ||| Sbjct 22405 TAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG 22346 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || ||||||| |||||||||||||||||||| || ||||| || |||||||| ||| Sbjct 22345 TCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAG 22286 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 || |||||||||||||| ||||| || || || Sbjct 22285 GACTCGACCTCGAGAGTGATGGTCTTGCCAGTAAG 22251 >seq1 Length=5948321 Score = 141 bits (156), Expect = 2e-28 Identities = 137/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || |||| |||||| | || || || ||||||||||| |||||||| || || || ||| Sbjct 4244177 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG 4244118 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 ||||| || | || ||||||||||||||||| || ||||| ||||||||||| || Sbjct 4244117 TCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAA 4244058 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| ||||| || ||||| ||||| || || | |||||| Sbjct 4244057 GACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 4244002 Score = 138 bits (152), Expect = 3e-27 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || |||| |||||| | || || || ||||||||||| |||||||| ||||| || ||| Sbjct 3541728 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGG 3541669 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || || || | || ||||||||||||||||| || ||||| ||||||||||| || Sbjct 3541668 TCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAA 3541609 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 || |||||||| ||||| ||||| |||||||| ||||| || Sbjct 3541608 GACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTAAC 3541565 >seq5 Length=3690501 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212 ||||| || ||| |||||||| | ||| |||| ||| || || |||||| | | Sbjct 3210114 CTCAGTCTGGGCCTCGAGAATGGCAAACCAGAGCTTCTGAGCCTTGATAGTCTTGCGGCC 3210173 Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272 || || ||| ||||||||||| |||||| |||| || ||| | ||| || Sbjct 3210174 CTTGCCCTCACGCTCGTACTTTTCGTAGAGAGCCTCAAACTCCTCAGAGTGGACGTCGGA 3210233 Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTT 178332 ||| ||||| || |||||| | ||| |||| | |||||| ||| || || | Sbjct 3210234 GAGGCCGGGGCATTCGGCGGGGCACATGAGGGTCCAGTCACCGTCAGCCTCGACACGCCT 3210293 Query 178333 CATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 |||||||||||| ||| |||||| ||| ||||| Sbjct 3210294 CATGAAGAGGTCCGAGATCCAGAGGGCGTAGAA 3210326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151747522205