Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4 131 4e-25 seq9 102 2e-16 seq1 102 2e-16 seq5 96.9 8e-15 seq16 89.7 1e-12 >seq4 Length=4180124 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||||||||| |||||||| || || |||| ||||| || | | || Sbjct 22978 ACGAAGACGAAGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 22919 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| |||||||| || || || || ||||| || || || || Sbjct 22918 GCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCC 22859 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| || || |||||||| || | || || || | Sbjct 22858 CTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCAAG 22799 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||||||||| || || | ||| | ||||| Sbjct 22798 AGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 22757 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || || || || || |||| ||||| |||| ||| || | ||||| Sbjct 23242 AGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATCC 23183 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || || ||||| || ||||| || |||||||| Sbjct 23182 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 23123 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| || | || || || | ||||| ||| Sbjct 23122 TGGATCTTCGCCTTAACGTTGTCGATAGTGTCGGACGACTCGACCTCCAGAGTGATGGTC 23063 Query 225682 TTGCCCGT 225689 || || || Sbjct 23062 TTTCCAGT 23055 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || || | ||||| |||| | || | ||||| Sbjct 22740 AGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCC 22681 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||||||||| || || |||||||| ||||| || |||||||| Sbjct 22680 TCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 22621 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| || | || || || | || || ||| Sbjct 22620 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGGGTAATGGTC 22561 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | ||| | ||||| Sbjct 22560 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 22529 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || |||||||| ||||| |||||| Sbjct 22387 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGAATGCCTTCC 22328 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||| || || |||||||| |||| || || || | ||| Sbjct 22327 TTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGAGTG 22268 Query 225676 ATCGTCTTGCCCGT 225689 || |||||||| || Sbjct 22267 ATGGTCTTGCCAGT 22254 >seq9 Length=4112 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 29 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 88 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 89 GTAACATGATGTATAGGGTCTGACAC 114 >seq1 Length=5948321 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || |||||||| || || || ||| Sbjct 3541710 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 3541651 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||| || ||||||||||| || | ||||| || | ||| Sbjct 3541650 TTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTG 3541591 Query 225676 ATCGTCTTGCCCGT 225689 || ||||||||||| Sbjct 3541590 ATGGTCTTGCCCGT 3541577 Score = 96.9 bits (106), Expect = 8e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| || || || || ||| Sbjct 4244159 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCC 4244100 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||| || ||||||||||| || | ||||| || | ||| Sbjct 4244099 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTG 4244040 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| || | || || | ||| | ||||| Sbjct 4244039 ATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 4244002 >seq5 Length=3690501 Score = 96.9 bits (106), Expect = 8e-15 Identities = 187/276 (68%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 193496 GTGTTTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCAC 193555 ||| | ||||||| ||| || | ||||| ||||||| |||||||| || Sbjct 3210054 GTGCTGCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGCATGAAGGGGCCACCAGT 3210113 Query 193556 CTCCGCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGC 193615 ||| | || || |||||||| | ||| || | ||||| || | ||| | | | | Sbjct 3210114 CTCAGTCTGGGCCTCGAGAATGGCAAACCAGAGCTTCTGAGCCTTGATAGTCTTGCGGCC 3210173 Query 193616 CTTTCCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTC 193675 ||| || || | ||||||||||||||| || ||||||| || | || || ||| Sbjct 3210174 CTTGCCCTCACGCTCGTACTTTTCGTAGAGAGCCTCAAACTCCTCAGAGTGGACGTCGGA 3210233 Query 193676 GAGACCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTT 193735 ||| ||||| ||| ||||| | ||| |||| || || ||| || || | | | Sbjct 3210234 GAGGCCGGGGCATTCGGCGGGGCACATGAGGGTCCAGTCACCGTCAGCCTCGACACGCCT 3210293 Query 193736 CATGAAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 |||||||||||| || |||| | ||||||||| || Sbjct 3210294 CATGAAGAGGTCCGAGATCCAGAGGGCGTAGAAGAG 3210329 >seq16 Length=1124 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || ||||| || ||||||| | |||| |||| |||||||||||||||||||||||| || Sbjct 152 GCACCATATACTGGTTGTGCTTTAGGTGAATTCTTTAGAGATAATGGTAAACATGCTGTA 93 Query 5091 ATCATCTACGATGATTTAAGTAAACAA 5117 || | || ||||||||| ||||||| Sbjct 92 ATTTTTTATGATGATTTATCTAAACAA 66 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530940251798