Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 3e-15 >seq3 Length=4554691 Score = 96.9 bits (106), Expect = 3e-15 Identities = 178/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 27454 AGCTGATCCACCCCCATCCCCGAGTAGTCTAC--CCTCATGTCCGTGTACTCTGCTCCGA 27511 ||||| ||||| ||| ||||| || || | | ||| || ||||| |||| |||| Sbjct 2526109 AGCTGGTCCACGCCCTGCCCCGCATAATCCGCGTCGGCAT--CCTTGTACGCTGCCCCGA 2526166 Query 27512 AATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGC 27571 |||| | ||| ||||| |||||||| || |||| || ||||| | |||| | | | Sbjct 2526167 AATGGCGCCACTGGAAGCCGTACACGGGCCCCAAATCGCCCTCGCGGCGGTGCCCCAGCC 2526226 Query 27572 CCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGG 27631 | |||||| | | | || | | |||||| || ||||||| || || ||||| ||| Sbjct 2526227 CGACCTTGTCGAGATACTCGCGGCTCCCGTTGCCGGCCCAGATGTTCACGCCCTTGGCGG 2526286 Query 27632 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT 27691 ||||| | || ||| | || ||| ||||| ||||||||||| | |||| | Sbjct 2526287 CGAGCTTGGCGCCGTCCGTGCATCCCGAGACAAACCAGAGCAGCTCCTCGATGACGCCGC 2526346 Query 27692 TCCAAAAGACCCTCTTGGT 27710 | || ||||||||||| Sbjct 2526347 GCGTGAACACCCTCTTGGT 2526365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507123442727