Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4 107 3e-18 >seq4 Length=4180124 Score = 107 bits (118), Expect = 3e-18 Identities = 147/203 (72%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || ||||| |||||||| |||||||| || |||||||| || || | ||| Sbjct 54906 TCGTTGGAGAAGGTGAGTCCGGGCATGAGTCCACGCTTCTTGAGCCAGAAGATCGAGGCG 54965 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || ||||| || ||||| || || || ||||| ||||| || | || | ||| || || Sbjct 54966 AACGATCCCGAGAAGAAGATACCCTCAACGGCAGCAAAGGCAATGAGGCGCTCAGCGAAA 55025 Query 48303 --CTGGCT-TCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 | ||| |||| ||||| || | ||||| || ||||||||||| | || || Sbjct 55026 GACGAGCTCTCGTCCGAGATCCAGCGGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGA 55085 Query 48360 ATTGTTTCTATAGCATTAAAGAG 48382 || || || || || || ||||| Sbjct 55086 ATGGTCTCAATGGCCTTGAAGAG 55108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668652382880