Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4 86.0 9e-12 >seq4 Length=4180124 Score = 86.0 bits (94), Expect = 9e-12 Identities = 142/203 (70%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 ||||| || || ||||| || ||||| ||||||||||| |||||||| || || | ||| Sbjct 54906 TCGTTGGAGAAGGTGAGTCCGGGCATGAGTCCACGCTTCTTGAGCCAGAAGATCGAGGCG 54965 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA- 46790 || ||||| || ||||| || || || || || || || || | || | ||| || | Sbjct 54966 AACGATCCCGAGAAGAAGATACCCTCAACGGCAGCAAAGGCAATGAGGCGCTCAGCGAAA 55025 Query 46791 -ACTGGC-ATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848 || || || | ||||| | ||||||| || ||||| ||||| | || || Sbjct 55026 GACGAGCTCTCGTCCGAGATCCAGCGGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGA 55085 Query 46849 ATTGTTTCTATAGCATTAAAGAG 46871 || || || || || || ||||| Sbjct 55086 ATGGTCTCAATGGCCTTGAAGAG 55108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934248501440