Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01]
17 sequences; 24,114,851 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq4 129 1e-24
>seq4
Length=4180124
Score = 129 bits (142), Expect = 1e-24
Identities = 158/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|||||||| |||||||| ||||| || ||||||||||| || | | || | || ||
Sbjct 22968 AGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCC 22909
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| || ||||| || || | ||||||||||| | ||| || ||||| |
Sbjct 22908 TCAAGCTGCTTT--CCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGT 22851
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| ||||| || ||||| | || | | |||| ||| ||| || |||||||| || |
Sbjct 22850 CCTGAATCTTCGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCAAGAGTGATGG 22791
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| |||||||| | ||||| ||||||| ||||||
Sbjct 22790 TCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 22757
Score = 120 bits (132), Expect = 7e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || || ||||| || ||||| || || |||||||| |||| | || |
Sbjct 22747 GAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCG 22688
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || |||||||||||||| | ||||||||| | | || || ||
Sbjct 22687 GCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTC 22628
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || || || ||||| | || | |||| ||| ||| || || || ||
Sbjct 22627 CTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGGGT 22568
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||| || ||||| ||||||||||| ||||||| ||||||
Sbjct 22567 AATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 22529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153820548683407
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |