Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4 125 5e-24 seq1 100 2e-16 >seq4 Length=4180124 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||||||| || |||||| || |||||||| |||| ||| ||| | || || Sbjct 22737 ACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 22678 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | ||||||||| || | ||| | || ||||| ||| Sbjct 22677 AGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGG 22618 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||| | || || ||||| | ||||| ||||| Sbjct 22617 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGGGTAATGGTCTTG 22558 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| |||||||| ||||| Sbjct 22557 CCGGTGAGAGTCTTGACGAAGATCTGCAT 22529 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| |||||| ||||||||||| || | ||| ||| |||| || Sbjct 22965 ACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCA 22906 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || || | ||||||||| || | || | || ||||| ||| Sbjct 22905 AGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGA 22846 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | | |||||||||| || || ||||| | || || ||||| Sbjct 22845 ATCTTCGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCAAGAGTGATGGTCTTG 22786 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | |||||| |||||||| ||||| Sbjct 22785 CCCGTCAAGGTCTTGACGAAGATCTGCAT 22757 Score = 109 bits (120), Expect = 4e-19 Identities = 142/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 || ||||||||||| |||||| ||||||||||| |||| | || | || | || || Sbjct 23239 ACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGT-ACGTCCATCCTC 23181 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || |||||||||| |||||||| || | || | || ||||| ||| Sbjct 23180 GAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTG 23121 Query 44248 TATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| || | || ||| | || ||||||| || || ||||||| || || |||| Sbjct 23120 GATCTTC-GCCTTAACGTTGTCGATAGTGTCGGACGACTCGACCTCCAGAGTGATGGTCT 23062 Query 44307 TTCCCGTGAGG 44317 |||| |||||| Sbjct 23061 TTCCAGTGAGG 23051 >seq1 Length=5948321 Score = 100 bits (110), Expect = 2e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| || |||||||| ||||| ||||| | ||||||||| || | || | || |||| Sbjct 4244158 CGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCT 4244099 Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 | ||| |||||| ||| | | | |||||||| | || |||||||| | || | Sbjct 4244098 TGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGA 4244039 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| || ||||||||||| ||||| || |||||| Sbjct 4244038 TGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATG 4244001 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| || |||||||| ||||| ||||| | |||||||| || | || | || |||| Sbjct 3541709 CGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCT 3541650 Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 | ||| ||||| ||| | | | |||||||| | || |||||||| | || | Sbjct 3541649 TGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGA 3541590 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||| |||||||||||||| || Sbjct 3541589 TGGTCTTGCCCGTGAGGGTCTTAAC 3541565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990325414489