Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6 109 1e-18 seq1 91.5 3e-13 >seq6 Length=2644601 Score = 109 bits (120), Expect = 1e-18 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||||| | || ||| | |||||||| || || || |||||||| | Sbjct 75777 CTCATCGGCATGAACGCCAACCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTG 75836 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || || || || ||||||| |||||||||| | |||||||| | || |||||| Sbjct 75837 CTCGTCGCCCTCGGCAACGAGAAGATGTACAACTCGACCAACCCCTTCGACTTCATGGAG 75896 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTC 230610 | || ||||| || || ||| ||||||| ||||| ||||||| Sbjct 75897 ATGATCTCGCTGCAGGGCAAGGCCAACTTTTTCGAGTCGCGTGTC 75941 >seq1 Length=5305799 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 230470 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAA 230529 ||| | |||||||| || || || ||||||||| | | || || || || ||||| || Sbjct 776099 ATGTGCCAGTACATGGAGTTTGTCGCCGACCGCCTCGTCGTGGCGCTCGGCTACGATAAG 776040 Query 230530 GTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACC 230589 | || ||| | | |||||| || | | ||||||||||| || || ||||| ||| || Sbjct 776039 ATCTATAACGCGACGAACCCGTTCGACTGGATGGAGCTCATCTCTCTGCAAGGCAAGGCC 775980 Query 230590 AACTTCTTCGAAAAGCGTGTCAG 230612 ||||| |||||| ||| ||||| Sbjct 775979 AACTTTTTCGAATCGCGCGTCAG 775957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823647612380