Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6 114 2e-20 seq1 93.3 5e-14 >seq6 Length=2644601 Score = 114 bits (126), Expect = 2e-20 Identities = 179/250 (72%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| ||||||||||| | || | ||||| || || |||||| Sbjct 75664 CAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAGT 75605 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| ||||||||||| || ||||| || ||||| || || || || || ||||| Sbjct 75604 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAAG 75545 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG-CTG-TCAT--G 24310 || || || || || ||||||||||| || | ||| | || || ||| || | | Sbjct 75544 ATGCCCTCGACGGCAGCAAAGGCAATGAGAC--GCTCGGCGAACGACGACTGTTCGTCGG 75487 Query 24311 T-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 | ||||| | ||||| ||||||||||| || | || || || ||||| || || | Sbjct 75486 TGATCCAGCGGAGCGCCCAGTCGGCCTTCTTCTTAATGCAGGGAATAGTCTCGATGGCCT 75427 Query 24370 TAAAGAGATA 24379 | ||||| || Sbjct 75426 TGAAGAGGTA 75417 >seq1 Length=5305799 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/219 (70%), Gaps = 10/219 (5%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| |||||| || || || ||||| || ||||| | || | ||||| || | Sbjct 776263 ACAGCAAACACGCAAAGTCCGTGTGTATGCCTTCGTCGCGGGATATGAGCTCGTTTGAGA 776322 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | ||||||||| |||| | |||||||| || ||||| || |||| ||||| ||||| | Sbjct 776323 AGGTGAGTCCGCGCATCAAACCACGCTTCTTGAGCCAGAAGATGGCGGCAAACGATCCCG 776382 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG----CG 24302 ||||||| || ||||| || |||||| ||||| || | | | | ||| | || Sbjct 776383 AAAAGAAGATGCCTTCAACGCACGCAAACGCAATGAGACGTG-TGCGGAACGGCATCTCG 776441 Query 24303 -CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 24340 |||| |||||| || | ||||| ||||||||||| Sbjct 776442 TCTGTGATGTAT----TTCAGCGCCCAGTCGGCCTTCTT 776476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721407040480