Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6 360 2e-94 seq5 138 1e-27 seq4 122 9e-23 seq1 118 1e-21 >seq6 Length=2644601 Score = 360 bits (398), Expect = 2e-94 Identities = 562/794 (71%), Gaps = 21/794 (3%) Strand=Plus/Plus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 ||||| |||||| |||||||||||||||||| ||||||| | |||| || ||| Sbjct 75120 TACAAGAAGGCCCAGGCGTCGTTCTGGACCGCCGAGGAGATTAACCTTGCCCCCGACCTT 75179 Query 116708 AGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCC 116764 ||||||||| | | ||||| || ||||| | || ||| ||||||| || ||| Sbjct 75180 CACGACTGGGACAACAAGCTCAACGATAATGAGCGTTACTTTATCGAGCACGTCCTTGCC 75239 Query 116765 TTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAG 116824 ||||||||||| ||||| |||||||||||||| || |||||||| ||| ||| Sbjct 75240 TTTTTCGCCGCGTCGGACGGAATCGTCAACGAGAACCTCGTCGAGCGCTTCTGCGGCGAG 75299 Query 116825 GTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCAC 116884 || ||| | || ||||| | |||||||||||| |||||| ||||||||| | ||| Sbjct 75300 GTCCAGATTGCAGAGGCCAAGACCTTCTACGGCTTCCAGATCATGATGGAGAACATCCAC 75359 Query 116885 TCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCT---CTTCG-GAGG--AGAAG 116938 ||||| | || ||| ||||||||||| ||| | ||| || | | | || | Sbjct 75360 TCGGAGACCTACTCGCTTCTCATCGACACCTACATCCGCGACACTGCCCGCCGCCAGTAC 75419 Query 116939 CTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCG 116998 ||| || || ||||||||||| || || ||| | || |||||||||| |||||| Sbjct 75420 CTC------TTCAAGGCCATCGAGACTATTCCCTGCATTAAGAAGAAGGCCGACTGGGCG 75473 Query 116999 CTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCC 117058 || ||||||||| ||| | | || | | |||| |||||| || | ||||| || ||| Sbjct 75474 CTCCGCTGGATCACCGACGAACAGTCGTCGTTCGCCGAGCGTCTCATTGCCTTTGCTGCC 75533 Query 117059 GTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGC 117118 ||||||||| ||||||| ||||| |||||| |||| || ||||||||||| || ||| Sbjct 75534 GTCGAGGGCATCTTCTTCTCGGGGTCGTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGC 75593 Query 117119 CTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGC 117178 ||||||||||| || || ||| |||||||||||||| | ||||||||||| || | Sbjct 75594 CTCATGCCCGGACTCACATTCTCGAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACC 75653 Query 117179 GACTTTGCCTGTTTGCTGTTCAAGCA--TTTGGTGCAGCGACCGAGCGCGGCGCGCGTCA 117236 ||||||||||| | || || || | | || || ||| | | || | ||| Sbjct 75654 GACTTTGCCTGCCTCCTCTTTGGCCACCTCCGCCGCCGC-ACCCACCCCGAC-ATTATCA 75711 Query 117237 GGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGG 117296 |||| ||| || || ||| || |||||| ||||||||||| || ||||| | Sbjct 75712 ACAAGATTATCAAGGAGGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCCCTGCCTG 75771 Query 117297 TGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGAC 117355 | || | || | || || || | |||| || ||||| ||||| ||||||||| Sbjct 75772 TCTCGCTCATCGGCATGAA-CGCCAACCTCATGTGCCAGTACATTGAGTTTGTCGCCGAC 75830 Query 117356 AGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTT 117415 | ||||| ||| || | | || ||| |||||| || ||||||| | ||||| Sbjct 75831 CGTCTGCTCGTCGCCCTCGGCAACGAGAAGATGTACAACTCGACCAACCCCTTCGACTTC 75890 Query 117416 ATGAACCTCATCTC 117429 ||| | | ||||| Sbjct 75891 ATGGAGATGATCTC 75904 Score = 140 bits (154), Expect = 3e-28 Identities = 146/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || |||||||| ||||||||| | || ||||| || | |||| | | | |||| |||| Sbjct 27182 CTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACG-TCAA 27240 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| |||||||| ||| | |||||||| || || || | ||| || Sbjct 27241 GGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTTATTTTCGCCGG 27300 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| ||||| || |||| || |||||| |||||||||||||||||||||| |||| || Sbjct 27301 CAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCT 27360 Query 40890 GCATCTAGT 40898 ||| || || Sbjct 27361 GCACCTCGT 27369 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || ||||| | | Sbjct 27389 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCG 27448 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 27449 GACACCATTGACAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 27507 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || ||||| || || | ||||| || |||||||| Sbjct 27508 GCAGCGCCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACTACAA 27567 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || || || || || Sbjct 27568 CATTCAGAAGGAGTCTACACTCCACCTCGT 27597 >seq5 Length=2819049 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA- 40760 || || || || |||||||| ||||||||| |||| || || | | |||| | | | Sbjct 1774504 GTTAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACCATCGAC 1774563 Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || || | ||||| |||||||||||| | |||||||| || ||||| Sbjct 1774564 AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCAT 1774622 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || ||| ||||| ||||| || |||| |||||||| |||||||||||||||||||| Sbjct 1774623 CTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGA 1774682 Query 40881 GGCCACGCTGCATCTAGT 40898 | | || || || || || Sbjct 1774683 GTCGACCCTCCACCTTGT 1774700 >seq4 Length=3045899 Score = 122 bits (134), Expect = 9e-23 Identities = 136/179 (76%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | | Sbjct 1996611 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 1996670 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 1996671 GACACCATCGACAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 1996729 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||| || || |||| ||| ||||| ||||| || |||| |||||||| ||||||| Sbjct 1996730 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 1996788 >seq1 Length=5305799 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 |||||| || |||||||||| ||||||||| | ||| | | | |||| |||| Sbjct 776488 CCGTGCATCCGCAAGAAGGCCGACTGGGCGCTGAAATACATCACAGAC-GAGATGCCG-- 776432 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 ||| || || || | || || ||| ||| || ||| ||||||||||||| || Sbjct 776431 TTCCGCACACGTCTCATTGCGTTTGCGTGCGTTGAAGGCATCTTCTTTTCGGGATCGTTT 776372 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 |||||||| || ||||||||||| || || | |||| ||| || || ||| |||||| Sbjct 776371 GCCGCCATCTTCTGGCTCAAGAAGCGTGGTTTGATGCGCGGACTCACCTTCTCAAACGAG 776312 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 ||||| ||| | ||||| || | || |||||||| |||||||||| Sbjct 776311 CTCATATCCCGCGACGAAGGCATACACACGGACTTTGCGTGTTTGCTGT 776263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219032553760