Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5 104 3e-17 seq6 102 9e-17 seq4 86.0 7e-12 >seq5 Length=2819049 Score = 104 bits (114), Expect = 3e-17 Identities = 133/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 1774683 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1774624 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 1774623 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 1774565 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| |||| |||||||| |||||||| || ||||| | Sbjct 1774564 TGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTAA 1774505 Query 43171 C 43171 | Sbjct 1774504 C 1774504 >seq6 Length=2644601 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| |||| ||||| || | || || |||||||| || || || Sbjct 27580 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAA 27521 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 27520 GATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 27462 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| ||| || || || | |||||||| ||||| || || ||||| | Sbjct 27461 TGTCAATGGTGTCCGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAGAGTCTTGA 27402 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 27401 CGAAAATCTGCAT 27389 Score = 89.7 bits (98), Expect = 6e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || || ||||| || | || || || |||| || |||||| Sbjct 27363 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGC 27304 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || ||||| || || ||||||||||||| || | || |||||||||| ||| || Sbjct 27303 TTGCCGGCGAAAATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTG 27244 Query 43101 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 |||| ||| | | | ||||| || || || || | |||||||| |||||||| Sbjct 27243 GCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 27185 Query 43160 TAG 43162 || Sbjct 27184 AAG 27182 >seq4 Length=3045899 Score = 86.0 bits (94), Expect = 7e-12 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 43006 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 43065 |||| || | || || || |||| || |||||||| || ||||| || || ||||||| Sbjct 1996788 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCT 1996729 Query 43066 GGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG 43124 |||| | || | || |||||||||| ||| || |||| ||| | | | ||||| Sbjct 1996728 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCC 1996670 Query 43125 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || |||| |||||||| ||||| || || ||||| || || || ||||| Sbjct 1996669 GAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1996611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817414159280