Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq6 107 1e-18 seq4 96.9 2e-15 seq5 89.7 3e-13 >seq6 Length=2644601 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || ||||| | ||| || ||||| ||||||||||| || Sbjct 27615 CCGCCACGAAGACGGAGGACGAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCAGAA 27556 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||| || || || || || ||||||||||| ||| Sbjct 27555 AGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGGCGCTGCTGGTCAGGGGGG 27496 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | || | ||| ||||| Sbjct 27495 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATGGTGTCCGACGACTCGACC 27436 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| |||||||| ||||| || || || |||||||| Sbjct 27435 TCAAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 27389 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| |||||||||||||| || |||| |||| Sbjct 27372 AGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCC 27313 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| |||||||| || |||||||||||| ||| | || ||||||||| Sbjct 27312 TCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 27253 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | || ||||| || | |||||||| Sbjct 27252 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTC 27193 Query 34358 TTGCCGGTGAG 34368 ||||| || || Sbjct 27192 TTGCCCGTAAG 27182 >seq4 Length=3045899 Score = 96.9 bits (106), Expect = 2e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 34212 TGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCT 34271 ||||||| || || ||| |||| || | ||||||||| ||||| || || ||||||| Sbjct 1996788 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCT 1996729 Query 34272 GGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGG 34331 |||| ||| | || ||||||||| ||||| ||| | | | | || | || | Sbjct 1996728 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCG 1996669 Query 34332 TCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 || ||||| || | |||||||| ||||||||||| || || || || |||||||| | Sbjct 1996668 AAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGG 1996609 Query 34392 C 34392 | Sbjct 1996608 C 1996608 >seq5 Length=2819049 Score = 89.7 bits (98), Expect = 3e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| |||| || | ||||||||| ||||| Sbjct 1774682 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 1774623 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||||||||| ||| | || ||||||||| ||||| ||| | | | Sbjct 1774622 ATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 1774563 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | || || || || | |||||||| ||||| || || || || || Sbjct 1774562 TCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTAAC 1774504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071897626560