Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3 244 2e-59 >seq3 Length=3131490 Score = 244 bits (270), Expect = 2e-59 Identities = 667/1009 (66%), Gaps = 28/1009 (3%) Strand=Plus/Plus Query 248734 ATGGTCGCCGATGACGTCCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCG 248793 ||| || |||| || ||| ||| ||| ||| |||| | ||| || |||||||| Sbjct 1591762 ATGATCTCCGAAGAGGTCTACAAGGTCGCCAAGGCCAACAAGGACCGTCTTGACGGCGCC 1591821 Query 248794 ATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCG 248853 ||| ||||| || || | ||| | | ||| | |||||| || || ||| ||| Sbjct 1591822 ATTATCTACGATCGCGACTTTGCCTACAACTACTTCGGTTTCAAGACCCTCGAGCGCTCG 1591881 Query 248854 TATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTG 248913 || |||||| || || |||||| ||| || || ||||||||| | ||||| || Sbjct 1591882 TACCTCCTCCGCATCGACGGCAAGGTCGCCGAGCGTCCCCAGCACATGATCATGCGTGTC 1591941 Query 248914 GCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGT 248973 | | || || ||| || |||| || | || | ||||| |||| | ||| Sbjct 1591942 TCGATTGGTATCCACGGCGACAACATTGACAAGGTCATTGAGACCTACAACCTCATGTCG 1592001 Query 248974 GAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAG 249033 || || | | || || ||| | || || |||||||||||||||||| | || ||| Sbjct 1592002 GAGCGTTACTTCACCCACGCCTCCCCTACCCTCTTCAACGCCGGTACCCCCCACCCCCAG 1592061 Query 249034 CTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACG 249093 || |||||||| ||| | |||||| | || ||||| | |||||||| || ||||| Sbjct 1592062 ATGTCGTCGTGCTTCCTTGTCGCCATGAAGGATGACTCGATTGACGGCATCTACGACACC 1592121 Query 249094 CTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAA 249152 || || || | || |||| || || || ||||| || |||||| | | ||| Sbjct 1592122 CTCAAGACCTGC-GCCCAGATCTCCAAGACTGCCGGCGGTATTGGTCTCCACATTCACAA 1592180 Query 249153 CATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACC 249212 ||| || || ||||| |||||||| || || || || | ||||| || || Sbjct 1592181 CATTCGTGCTAAGGGCTCGTACATTGCTGGCACCAACGGCTATTCGAACGGTATTGTTCC 1592240 Query 249213 CCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGG------GCGCCG 249266 | | || || || || |||| ||| | | || |||||| || ||||| Sbjct 1592241 CATGCTCCGCGCCTACGACGCCACTGCCCGTTATGTCGACCAGGGTGGCAACAAGCGCC- 1592299 Query 249267 AAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGA 249326 || | || ||||| || | || ||||||||||| | || || ||||| || Sbjct 1592300 --CTGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACGCCGACGTCTTCGACTTCCTCGA 1592357 Query 249327 CTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTG 249386 | | |||||| ||||||| ||| | | || |||||||||||||||| ||| || Sbjct 1592358 CCTTCGCAAGAACCACGGCAAGGAGGAGGTTCGTGCCCGTGACCTCTTCTACGCCCTCTG 1592417 Query 249387 GGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCC 249446 | |||||||| | ||||||||||| ||| |||||||||| || ||||| || | | || Sbjct 1592418 GATCTCCGACCTCTTCATGCGCCGTGTCGAGGCCGACGGTGACTGGACCCTCATGTGCCC 1592477 Query 249447 GTCCGA-CGCCCCGGACCTCATCGA--TCTACACGGCGCCGACTTCGACCAAGCCTATAA 249503 |||| ||||||| ||| ||| || || ||| | || || || ||| | Sbjct 1592478 CGCCGAGTGCCCCGG-CCTTTCCGACGTCCACTCGGAG--GAGTTTGAGGCCCTCTACGA 1592534 Query 249504 GAAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCTT---TTTGC 249557 ||| ||||| | |||| | ||||||| |||||||||| || ||| || || Sbjct 1592535 GAAGTACGAGCGTGAGGGCAAGGGTCGCAAGACCATCAAGGCTCAGAAGCTTTGGTTCGC 1592594 Query 249558 GAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGT 249616 | | | ||| |||||| ||||| || || || | | || | | ||| ||||| Sbjct 1592595 CA---TCCTCGAGGCCCAGACCGAGACTGGTGGCCCCT-TCATGCTCTACAAGGACGCTG 1592650 Query 249617 GCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAG 249676 |||| |||| ||||| | ||| || || |||||| ||||| || ||||| | | Sbjct 1592651 CCAACCGCAAGTCAAACCAGCAGCACCTCGGCACCATCAAGTCGTCCAACCTCTGCACTG 1592710 Query 249677 AGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 || | || | |||||| || || ||| | |||||||||||||| || Sbjct 1592711 AGATCATCGAGTACTCGGCCCCCGACGAGGTCGCCGTCTGCAACCTTGC 1592759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766042301568