Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 315 6e-81 seq6 176 4e-39 seq4 104 2e-17 seq1 84.2 2e-11 >seq3 Length=3131490 Score = 315 bits (348), Expect = 6e-81 Identities = 637/939 (68%), Gaps = 10/939 (1%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| ||||| |||||||| || || |||||| | || || || || Sbjct 1592762 GAGGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCCGAGTACTCGATGATCTCAGTGCAG 1592703 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCT-CTGGTTGCTTTTTCGATTGCACGAATC 23145 || ||| |||| || ||||| | | ||| |||||| || || ||| | || Sbjct 1592702 AGGTTGGACGACTTGATGGTGCCGAGGT-GCTGCTGGTTTGACTTGCGGTTGGCAGCGTC 1592644 Query 23146 CTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACAT 23205 ||||||||||||| | || || |||||| ||| | ||||| ||| || ||| | Sbjct 1592643 CTTGTAGAGCATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATGGCGAACCAAAG 1592584 Query 23206 AGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACG 23264 ||||||| | | ||| || ||| ||| || ||||||||| | ||| | | Sbjct 1592583 CTTCTGAGCCTTGATG-GTCTTGCGACCCTTGCCCTCACGCTCGTACTTCTCGTAGAGGG 1592525 Query 23265 CGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324 | ||||| || | || ||||| |||||||| | | || |||||||| Sbjct 1592524 CCTCAAACTCCTCCGAGTGGACGTCGGAAAGGCCGGGGCACTCGGCGGGGCACATGAGGG 1592465 Query 23325 TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384 |||| ||| || || || | ||| || || || | ||||| || ||||||| Sbjct 1592464 TCCAGTCACCGTCGGCCTCGACACGGCGCATGAAGAGGTCGGAGATCCAGAGGGCGTAGA 1592405 Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444 | || || ||||| || |||||||| |||||| |||||| | || | ||||| | Sbjct 1592404 AGAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAAGTCGA 1592345 Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504 | ||||| || ||||| ||||||||||| | |||||| || || || | ||| ||||| | Sbjct 1592344 AGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCAC 1592285 Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564 |||| ||||| |||||||| ||| || ||| | | ||||| || || | |||||| | Sbjct 1592284 CCTGGTCGACATAACGGGCAGTGGCGTCGTAGGCGCGGAGCATGGGAACAATACCGTTCG 1592225 Query 23565 ACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAAC 23624 | |||| ||| || | ||| || || || |||| |||||||| ||||| || Sbjct 1592224 AATAGCCGTTGGTGCCAGCAATGTACGAGCCCTTAGCACGAATGTTGTGAATGTGGAGAC 1592165 Query 23625 CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684 | || || ||| | | || || ||| ||||| || || |||||||||||||| | Sbjct 1592164 CAATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATGCCGT 1592105 Query 23685 CGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAG 23744 | || ||| || || | ||||| | ||| ||||| ||||| || | | ||| ||| Sbjct 1592104 CAATCGAGTCATCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTGGGGGGTAC 1592045 Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACG 23804 |||| ||| || || ||| |||||| || ||||| | | |||||| || ||||| | Sbjct 1592044 CGGCGTTGAAGAGGGTAGGGGAGGCGTGGGTGAAGTAACGCTCCGACATGAGGTTGTAGG 1591985 Query 23805 TGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGT 23864 | || ||| | ||||||| || ||||| ||||| || | ||| ||||| ||||||| Sbjct 1591984 TCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCAATCGAGACACGCATGATCATGT 1591925 Query 23865 ATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCG 23921 || || | || ||||| | ||||| || || || || || || | | | Sbjct 1591924 GCTGGGGACGCTCGGCGACCTT---GCCGTCGATGCGGAGGAGGTACGAGCGCTCGAGGG 1591868 Query 23922 TTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 | || || || || |||| ||| |||||| ||||||| Sbjct 1591867 TCTTGAAACCGAAGTAGTTGTAGGCAAAGTCGCGATCGT 1591829 >seq6 Length=2644601 Score = 176 bits (194), Expect = 4e-39 Identities = 535/819 (65%), Gaps = 17/819 (2%) Strand=Plus/Plus Query 57582 TACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTG 57641 ||||| ||||| | || ||||| ||||||| ||| || | |||| | || || Sbjct 75120 TACAAGAAGGCCCAGGCGTCGTTCTGGACCGCCGAGGAGATTAACCTTGCCCCCGACCTT 75179 Query 57642 AGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCG 57698 ||| ||||| | ||||| || |||| | | ||||| | ||||| | || Sbjct 75180 CACGACTGGGACAACAAGCTCAACGATAATGAGCGTTACTTTATCGAGCACGTCCTTGCC 75239 Query 57699 TTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAA 57758 ||||||||||| || || || || || |||||||| | ||||| | || | || Sbjct 75240 TTTTTCGCCGCGTCGGACGGAATCGTCAACGAGAACCTCGTCGAGCGCTTCTGCGGCGAG 75299 Query 57759 GTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCAT 57818 || || | | ||||| | ||| ||||| || || | || || ||| | || Sbjct 75300 GTCCAGATTGCAGAGGCCAAGACCTTCTACGGCTTCCAGATCATGATGGAGAACATCCAC 75359 Query 57819 TCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAA----CGACGAGAAACG 57874 || || | || ||||| |||||||| || ||| | |||| || || | | Sbjct 75360 TCGGAGACCTACTCGCTTCTCATCGACACCTACATCCGCGACACTGCCCGCCGCCA---G 75416 Query 57875 TAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAAT 57934 || || ||||| || ||||| || || ||| || |||||||| || ||| | | Sbjct 75417 TAC-CTCTTCAAGGCCATCGAGACTATTCCCTGCATTAAGAAGAAGGCCGACTGGGCGCT 75475 Query 57935 CAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGT 57994 | ||||| | || | | ||||||||||| | || || || || || ||||| Sbjct 75476 CCGCTGGATCACCGACGAACAGTCGTCGTTCGCCGAGCGTCTCATTGCCTTTGCTGCCGT 75535 Query 57995 CGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCT 58054 ||| || || ||||| ||||| || || | || || ||| | ||||| || ||||| Sbjct 75536 CGAGGGCATCTTCTTCTCGGGGTCGTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCT 75595 Query 58055 GATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGA 58114 |||||||| || || || |||||| | || |||||||||||||||||||| || || Sbjct 75596 CATGCCCGGACTCACATTCTCGAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGA 75655 Query 58115 TTTTGCGTGCCTAATGTACTCTCACAT-TGTCAATAAACCGACGCGGGATCGCATCTTGG 58173 ||||| ||||| | | ||| | | | ||| || | || ||| Sbjct 75656 CTTTGCCTGCCTCCTCTTTGGCCACCTCCGCCGCCGCACCCAC-CCCGACATTATCAACA 75714 Query 58174 ACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGG 58233 | ||||||| ||||| ||| ||| || | ||||| ||||||| ||||| || || Sbjct 75715 AGATTATCAAGGAGGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCCCTGCCTGTCT 75774 Query 58234 CCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGAC 58293 | | |||| |||||| | | |||| |||||||||||||||| |||||| | | Sbjct 75775 CGCTCATCGGCATGAACGCCAACCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTC 75834 Query 58294 TTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTAT 58351 | | ||| || | |||| | |||||| ||| || || || || || || Sbjct 75835 TGCTCGTCGCCCTCGGCAACGAGAAGAT--GTACAACTCGACCAACCCCTTCGACTTCAT 75892 Query 58352 GAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGA 58390 | | |||||||||| |||||||| | ||||||||||| Sbjct 75893 GGAGATGATCTCGCTGCAGGGCAAGGCCAACTTTTTCGA 75931 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||||||||| ||||| || |||||| | || || || |||| Sbjct 27389 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCG 27448 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || ||||||||| ||| | || || |||||| Sbjct 27449 GACACCATTGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 27508 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| || || || || || || ||| | || || Sbjct 27509 CAGCGCCTTATCTTTGCCGGAAAGCAGCTCGAGGA 27543 >seq4 Length=3045899 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || ||||| || |||||| |||| || || | || Sbjct 1996610 CATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTC 1996669 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || || ||||||||| ||| | || || ||||| Sbjct 1996670 GGACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 1996729 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || ||||| ||||| ||| | || ||| Sbjct 1996730 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGAC 1996766 >seq1 Length=5305799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || ||||| || ||| ||||| || ||||||||||| ||||| || || || Sbjct 776419 CTCATTGCGTTTGCGTGCGTTGAAGGCATCTTCTTTTCGGGATCGTTTGCCGCCATCTTC 776360 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||| || || |||||| ||| || || || |||||| | ||||| ||| Sbjct 776359 TGGCTCAAGAAGCGTGGTTTGATGCGCGGACTCACCTTCTCAAACGAGCTCATATCCCGC 776300 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTG 58123 ||||| || | || || || |||||||| Sbjct 776299 GACGAAGGCATACACACGGACTTTGCGTG 776271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766255125920