Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 7e-15 seq3 89.7 1e-12 >seq6 Length=2644601 Score = 96.9 bits (106), Expect = 7e-15 Identities = 116/155 (75%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTT-TAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||||| || || || |||||||| | | ||| | ||||| ||||| |||||| Sbjct 75520 TTGCCTTTGCTGCCGTCGAGGGCATCTTCTTCTCGGGGT-CGTTCGCCTCCATCTTCTGG 75578 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | |||| || ||||| | ||| || ||| |||| || | ||| Sbjct 75579 CTCAAGAAGCGTGGCCTCATGCCCGGACTCACATTCTCGAACGAGCTCATCTCGCGCGAC 75638 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 || ||||| || ||||||||| ||| | || || Sbjct 75639 GAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTT 75673 >seq3 Length=3131490 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451 ||| ||||| ||| ||| || |||||||| | |||| |||||| || |||||||| Sbjct 1592559 ACCCTTGCCCTCACGCTCGTACTTCTCGTAGAGGGCCTCAAACTCCTCCGAGTGGACGTC 1592500 Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCA 94490 ||||||||| ||||||||| ||||||||| |||| ||| Sbjct 1592499 GGAAAGGCCGGGGCACTCGGCGGGGCACATGAGGGTCCA 1592461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583670344830