Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 132 6e-26 seq1 89.7 6e-13 >seq6 Length=2644601 Score = 132 bits (146), Expect = 6e-26 Identities = 183/250 (73%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||| ||||||||||| | || | ||||| || || |||||| Sbjct 75664 CAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAGT 75605 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||||||||| || ||||| || ||||| ||||| || || || |||||| Sbjct 75604 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAAG 75545 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG-CTG-TCAT--G 33757 || || || || |||||||||||||| || | ||| | | || || ||| || | | Sbjct 75544 ATGCCCTCGACGGCAGCAAAGGCAATGAGACGCTCGGC--GAACGACGACTGTTCGTCGG 75487 Query 33758 T-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816 | ||||| | ||||| ||||||||||| || | || || || || || ||||| | Sbjct 75486 TGATCCAGCGGAGCGCCCAGTCGGCCTTCTTCTTAATGCAGGGAATAGTCTCGATGGCCT 75427 Query 33817 TAAAGAGATA 33826 | ||||| || Sbjct 75426 TGAAGAGGTA 75417 >seq1 Length=5305799 Score = 89.7 bits (98), Expect = 6e-13 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 33624 TCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33683 ||||| || || ||||||||| |||| | |||||||| || ||||| || |||| || Sbjct 776313 TCGTTTGAGAAGGTGAGTCCGCGCATCAAACCACGCTTCTTGAGCCAGAAGATGGCGGCA 776372 Query 33684 AATGATCCGGAAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAG 33730 || ||||| ||||||||||| ||||| || ||| ||||| ||||| || Sbjct 776373 AACGATCCCGAAAAGAAGATGCCTTCAAC-GCACGCAAACGCAATGAG 776419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817395309280