Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6 120 4e-22 seq1 96.9 5e-15 >seq6 Length=2644601 Score = 120 bits (132), Expect = 4e-22 Identities = 179/249 (72%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || ||| ||| ||||||||||| | || | ||||| || || |||||| Sbjct 75664 CAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAGT 75605 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||||||| ||||||||||| || ||||| || ||||| || || || || || ||||| Sbjct 75604 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAAG 75545 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG-TCAT--GT 36334 || || || || || ||||||||||| || | ||| | ||| |||| || | || Sbjct 75544 ATGCCCTCGACGGCAGCAAAGGCAATGAGACGCTCGGC-GAACGACGACTGTTCGTCGGT 75486 Query 36335 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| | ||||| ||||||||||| || | || || || ||||| || || || Sbjct 75485 GATCCAGCGGAGCGCCCAGTCGGCCTTCTTCTTAATGCAGGGAATAGTCTCGATGGCCTT 75426 Query 36394 AAAGAGATA 36402 ||||| || Sbjct 75425 GAAGAGGTA 75417 >seq1 Length=5305799 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/220 (70%), Gaps = 12/220 (5%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| |||||| || || || ||||| || ||||| | || | ||||| || | Sbjct 776263 ACAGCAAACACGCAAAGTCCGTGTGTATGCCTTCGTCGCGGGATATGAGCTCGTTTGAGA 776322 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 36269 | ||||||||| |||| | |||||||| || ||||| || |||| ||||| ||||| | Sbjct 776323 AGGTGAGTCCGCGCATCAAACCACGCTTCTTGAGCCAGAAGATGGCGGCAAACGATCCCG 776382 Query 36270 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA---- 36325 ||||||| || ||||| || |||||| ||||| || | | | | ||| |||| Sbjct 776383 AAAAGAAGATGCCTTCAACGCACGCAAACGCAATGAGACG-TGTGCGGAAC-GGCATCTC 776440 Query 36326 --CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 36363 |||| |||||| || | ||||| ||||||||||| Sbjct 776441 GTCTGTGATGTAT----TTCAGCGCCCAGTCGGCCTTCTT 776476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172586093840