Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 3e-15 seq1 84.2 2e-11 >seq6 Length=2644601 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 |||||||| || | ||| | || | ||| | |||||||| || |||||||| || || Sbjct 27618 TGGCCGCCACGAAGACGGAGGACGAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCA 27559 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| || |||||||| || || ||| |||| || || ||||| || || Sbjct 27558 GAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGGCGCTGCTGGTCAGGG 27499 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| ||| || || | | || | ||||| | | ||| Sbjct 27498 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATGGTGTCCGACGACTCG 27439 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||| ||| | ||||||||||||| || || ||||| || |||||| Sbjct 27438 ACCTCAAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCATA 27388 >seq1 Length=5305799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608 || ||||| | ||||| |||| || ||||| |||||| ||| | |||| | ||| Sbjct 776491 GTCCCGTGCATCCGCAAGAAGGCCGACTGGGCGCTGAAATACATCACAGACGAGAT-GCC 776433 Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668 || | |||||| | |||||||| || ||||| | || |||||||| Sbjct 776432 G--TTCCGCACACGTCTCATTGCGTTTGCGTGCGTTGAAGGCATCTTCTTTTCGGGATCG 776375 Query 52669 TTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAA 52727 ||||| || || || | |||| || | ||| | |||| ||| ||||| || || Sbjct 776374 TTTGCCGCCATCTTCTGGCTCAAGAAGCGTGGTT-TGATGCGCGGACTCACCTTCTCAAA 776316 Query 52728 CGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG 52776 |||| | ||||| ||||||||||| || ||||| || |||||||||||| Sbjct 776315 CGAGCTCATATCCCGCGACGAAGGCATACACACGGACTTTGCGTGTTTG 776267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063838779200