Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 129 8e-25 seq1 87.8 3e-12 >seq6 Length=2644601 Score = 129 bits (142), Expect = 8e-25 Identities = 183/250 (73%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||| ||||||||||| | || || ||||| || || |||||| Sbjct 75664 CAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAGT 75605 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| ||||||||||| || ||||| || ||||| || || ||||| || |||||| Sbjct 75604 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAAG 75545 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG-CTG-TCAT--G 50135 || || || || || |||||||||| || | ||| | ||| | || ||| || | | Sbjct 75544 ATGCCCTCGACGGCAGCAAAGGCAATGAGACGCTCGGC-GAAC-GACGACTGTTCGTCGG 75487 Query 50136 T-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 | ||||| | ||||| ||||||||||| || | || || || || || ||||| | Sbjct 75486 TGATCCAGCGGAGCGCCCAGTCGGCCTTCTTCTTAATGCAGGGAATAGTCTCGATGGCCT 75427 Query 50195 TAAAGAGATA 50204 | ||||| || Sbjct 75426 TGAAGAGGTA 75417 >seq1 Length=5305799 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| |||||| || || || ||| | || ||||| | || || ||||| || | Sbjct 776263 ACAGCAAACACGCAAAGTCCGTGTGTATGCCTTCGTCGCGGGATATGAGCTCGTTTGAGA 776322 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | ||||||||| |||| | |||||||| || ||||| || |||| ||||| || || | Sbjct 776323 AGGTGAGTCCGCGCATCAAACCACGCTTCTTGAGCCAGAAGATGGCGGCAAACGATCCCG 776382 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAA 50104 |||||||||| ||||| || ||||| |||| Sbjct 776383 AAAAGAAGATGCCTTCAACGCACGCAAACGCAA 776415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268566562640