Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6 116 5e-21 seq1 93.3 6e-14 >seq6 Length=2644601 Score = 116 bits (128), Expect = 5e-21 Identities = 178/249 (71%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| ||| |||||||| || | || | ||||| || || |||||| Sbjct 75664 CAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAGT 75605 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| ||||||||||| || ||||| || || || || || || || || |||||| Sbjct 75604 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAAG 75545 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG-TCAT--GT 42241 || || || || || ||||||||||| || | ||| | ||| |||| || | || Sbjct 75544 ATGCCCTCGACGGCAGCAAAGGCAATGAGACGCTCGGC-GAACGACGACTGTTCGTCGGT 75486 Query 42242 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| | ||||| ||||||||||| || | || || || || || ||||| || Sbjct 75485 GATCCAGCGGAGCGCCCAGTCGGCCTTCTTCTTAATGCAGGGAATAGTCTCGATGGCCTT 75426 Query 42301 AAAGAGATA 42309 ||||| || Sbjct 75425 GAAGAGGTA 75417 >seq1 Length=5305799 Score = 93.3 bits (102), Expect = 6e-14 Identities = 124/170 (73%), Gaps = 12/170 (7%) Strand=Plus/Plus Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166 ||||| || || ||||||||| |||| | |||||||| || ||||| || || | ||| Sbjct 776313 TCGTTTGAGAAGGTGAGTCCGCGCATCAAACCACGCTTCTTGAGCCAGAAGATGGCGGCA 776372 Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 42226 || ||||| ||||||||||| ||||| || |||||| ||||| || | | | | || Sbjct 776373 AACGATCCCGAAAAGAAGATGCCTTCAACGCACGCAAACGCAATGAGAC-GTGTGCGGAA 776431 Query 42227 CCGGCA------CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 ||||| |||| |||||| || | ||||| ||||||||||| Sbjct 776432 -CGGCATCTCGTCTGTGATGTAT----TTCAGCGCCCAGTCGGCCTTCTT 776476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138981879760