Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 271 1e-67 seq3 143 4e-29 seq1 102 1e-16 >seq6 Length=2644601 Score = 271 bits (300), Expect = 1e-67 Identities = 564/830 (68%), Gaps = 25/830 (3%) Strand=Plus/Plus Query 125031 TACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTG 125090 ||||| ||||| ||||| || || ||||| | ||| ||| | | || || ||||| Sbjct 75120 TACAAGAAGGCCCAGGCGTCGTTCTGGACCGCCGAGGAGATTAACCTTGCCCCCGACCTT 75179 Query 125091 TACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGC 125149 |||| ||||| | | | | || || | |||||| | ||||| |||| | | || Sbjct 75180 CACGACTGGGACAACAAGCTCAAC-GATAATGAGCGTTACTTTATCGAGCACGTCCTTGC 75238 Query 125150 CTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAG 125208 ||| || |||| || || |||||||||||||| || || || || || |||| | Sbjct 75239 CTTTTTCGCCGCGTCGGACGGAATCGTCAACGAGAACCTCGTCGAG-CGCTTCTGCGGCG 75297 Query 125209 AGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGC 125268 || | ||| |||||| | ||| ||||| ||||| |||||||| |||||| | | Sbjct 75298 AGGTCCAGATTGCAGAGGCCAAGACCTTCTACGGCTTCCAGATCATGATGGAGAACATCC 75357 Query 125269 ACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TCCGCAACGTAAAC 125325 ||||||| | ||||| || || |||| ||||| ||||| | | | || | Sbjct 75358 ACTCGGAGACCTACTCGCTTCTCATCGACACCTACATCCGCGACACTGCCCGCCGCCAGT 75417 Query 125326 ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGA 125385 || ||||| || || ||||| || | || | || || ||||| | |||| | Sbjct 75418 AC---CTCTTCAAGGCCATCGAGACTATTCCCTGCATTAAGAAGAAGGCCGACTGGGCGC 75474 Query 125386 TTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCG 125445 | || |||||| ||||| |||| |||| |||||| | || | || || || |||| Sbjct 75475 TCCGCTGGATCACCGACGAACAGTCGTCGTTCGCCGAGCGTCTCATTGCCTTTGCTGCCG 75534 Query 125446 TAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGAC 125505 | |||||||||||||| ||||| || || ||||||| |||||||||||||| || | Sbjct 75535 TCGAGGGCATCTTCTTCTCGGGGTCGTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCC 75594 Query 125506 TCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTG 125565 ||||||||||||| || | |||||| | || || || |||||||| || ||| | Sbjct 75595 TCATGCCCGGACTCACATTCTCGAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCG 75654 Query 125566 ACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAA 125625 |||||||| || || ||| || || || || | || | || | || | Sbjct 75655 ACTTTGCCTGCCTCCTCTTTGGCCAC---CTCCGCC------GCCGCACCCACCCCGACA 75705 Query 125626 AGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCC 125685 ||| ||| ||| | | || ||||| | ||| || || ||||| || ||||| ||| Sbjct 75706 TTATCAACAAGATTATCAAGGAGGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCCC 75765 Query 125686 TACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGG 125745 | || ||| | || ||||||||| ||| || |||||| ||||||| |||||||| | Sbjct 75766 TGCCTGTCTCGCTCATCGGCATGAACGCCAACCTCATGTGCCAGTACATTGAGTTTGTCG 75825 Query 125746 CAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCT 125802 | || ||||| || || | ||| || ||||| |||||| | | || |||| Sbjct 75826 CCGACCGTCTGCT---CGTCGCCCTCGGCAACGAGAAGATGTACAACTCGACCAACCCCT 75882 Query 125803 TTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAG 125852 | || |||||| | || || || |||| ||| |||||||||||||| Sbjct 75883 TCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGGCCAACTTTTTCGAG 75932 >seq3 Length=3131490 Score = 143 bits (158), Expect = 4e-29 Identities = 314/464 (68%), Gaps = 10/464 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| | || || |||||||| ||| Sbjct 1592281 CAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACGCCGAC 1592340 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || ||||| |||| | ||||| ||| ||| || |||| || ||| | ||| Sbjct 1592341 GTCTTCGACTTCCTCGACCTTCGCAAGAACCACGGCAAGGAGGAGGTTCGTGCCCGTGAC 1592400 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA---CGACGGTGGC 97052 | || || || |||||| | | || | |||||| || ||| | |||||||| Sbjct 1592401 CTCTTCTACGCCCTCTGGATCTCCGACCTCTTCATGCGCCGTGTCGAGGCCGACGGTG-- 1592458 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| ||| |||||||||| | || ||||| || ||||| | || ||| Sbjct 1592459 -ACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTTTCCGACGTCCACTCGGAGGAG 1592517 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGAGTCGATGC 97171 ||||||||| ||| | ||||||| |||||| | || |||| | || | || Sbjct 1592518 TTTGAGGCCCTCTACGAGAAGTACGAGCGTGAGGGCAAGGGTCGCAAGACCA-TCAAGGC 1592576 Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | |||| || ||| |||||| | ||| ||| |||||||| || | ||| | Sbjct 1592577 TC-AGAAGCTTTGGTTCGCCATCCTCGAGGCCCAGACCGAGACTGGTGGCCCCTTCATGC 1592635 Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 |||||||||| | | || ||||| ||||| | ||| | |||||||||||| | Sbjct 1592636 TCTACAAGGACGCTGCCAACCGCAAGTCAAACCAGCAGCACCTCGGCACCATCAAGTCGT 1592695 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 |||| || ||||| || || | |||||| | | || |||||| Sbjct 1592696 CCAACCTCTGCACTGAGATCATCGAGTACTCGGCCCCCGACGAG 1592739 >seq1 Length=5305799 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 125444 CGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGG 125503 ||| || ||||||||||||||||| ||||| |||||||| |||||||||||||| || Sbjct 776402 CGTTGAAGGCATCTTCTTTTCGGGATCGTTTGCCGCCATCTTCTGGCTCAAGAAGCGTGG 776343 Query 125504 ACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTG 125563 | |||| |||||| || | |||||| | ||||| || ||||| ||| ||||| Sbjct 776342 TTTGATGCGCGGACTCACCTTCTCAAACGAGCTCATATCCCGCGACGAAGGCATACACAC 776283 Query 125564 TGACTTTGC 125572 |||||||| Sbjct 776282 GGACTTTGC 776274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058959155760