Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq9 152 8e-33 seq1 152 8e-33 >seq9 Length=1756552 Score = 152 bits (168), Expect = 8e-33 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || ||||||||||| || ||||| ||||| ||||| |||||| Sbjct 228335 CTTCGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGTGGT 228394 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| | || || | |||| || |||| |||| ||| | |||| |||| Sbjct 228395 GGTGTCAAGCGTATTTCCGGCCTCATCTACGAGGAGACCCGTGGTGTCCTCAAGACCTTC 228454 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || | || ||| || |||||||| || || ||||| ||| Sbjct 228455 CTCGAGAACGTCATCCGCGACTCGGTCACCTACACTGAGCACGCCAAGCGCAAGACCGTC 228514 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| | || ||||||| || | || || || ||||| | | || ||||| || Sbjct 228515 ACCTCGCTCGACGTCGTCTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGTTTCGG 228573 >seq1 Length=5305799 Score = 152 bits (168), Expect = 8e-33 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || || |||||||| |||||||| ||||| || || |||||| Sbjct 894766 CTTCGTGACAACATCCAGGGTATTACCAAGCCCGCTATCCGCCGTCTCGCCCGCCGTGGT 894707 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| | || || | |||| || |||| ||||| ||| | |||| |||| Sbjct 894706 GGTGTCAAGCGTATTTCCGGCCTCATCTACGAGGAGACTCGTGGTGTCCTCAAGACCTTC 894647 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || | || ||| ||||||||||| || || ||||| ||| Sbjct 894646 CTCGAGAACGTCATCCGCGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTC 894587 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| | || | ||||| || | || || || ||||| | | || ||||| || Sbjct 894586 ACCTCGCTCGACGTTGTCTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGTTTCGG 894528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075176228018