Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 138 1e-27 seq1 93.3 5e-14 >seq6 Length=2644601 Score = 138 bits (152), Expect = 1e-27 Identities = 184/250 (74%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||| ||||||||||| | || || ||||| || || |||||| Sbjct 75664 CAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAGT 75605 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||||||||| || ||||| || ||||| ||||| || || || |||||| Sbjct 75604 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAAG 75545 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG-CTG-TCAT--G 33479 || || || || |||||||||||||| || | ||| | | || || ||| || | | Sbjct 75544 ATGCCCTCGACGGCAGCAAAGGCAATGAGACGCTCGGC--GAACGACGACTGTTCGTCGG 75487 Query 33480 T-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 | ||||| | ||||| ||||||||||| || | || || || || || ||||| | Sbjct 75486 TGATCCAGCGGAGCGCCCAGTCGGCCTTCTTCTTAATGCAGGGAATAGTCTCGATGGCCT 75427 Query 33539 TAAAGAGATA 33548 | ||||| || Sbjct 75426 TGAAGAGGTA 75417 >seq1 Length=5305799 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| |||||| || || || ||| | || ||||| | || || ||||| || | Sbjct 776263 ACAGCAAACACGCAAAGTCCGTGTGTATGCCTTCGTCGCGGGATATGAGCTCGTTTGAGA 776322 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | ||||||||| |||| | |||||||| || ||||| || |||| || || ||||| | Sbjct 776323 AGGTGAGTCCGCGCATCAAACCACGCTTCTTGAGCCAGAAGATGGCGGCAAACGATCCCG 776382 Query 33416 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAG 33452 |||||||||| ||||| || ||| ||||| ||||| || Sbjct 776383 AAAAGAAGATGCCTTCAAC-GCACGCAAACGCAATGAG 776419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946997542160