Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3 392 8e-104 seq1 98.7 3e-15 >seq3 Length=3131490 Score = 392 bits (434), Expect = 8e-104 Identities = 1133/1729 (66%), Gaps = 32/1729 (2%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || || ||||| ||| | |||||||| | ||||||||||| || | |||| Sbjct 1591912 GAGCGTCCCCAGCACATGATCATGCGTGTCTCGATTGGTATCCACGGCGACAACATTGAC 1591971 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACA 363567 | ||||| || || || || | | ||| ||||| |||||| | || || Sbjct 1591972 AAGGTCATTGAGACCTACAACCTCATGTCGGAGCGTTACTTCACCCACGCCTCCCCTACC 1592031 Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627 | | ||| || || || | | || |||||||| || ||||| ||| | |||||| Sbjct 1592032 CTCTTCAACGCCGGTACCCCCCACCCCCAGATGTCGTCGTGCTTCCTTGTCGCCATGAAG 1592091 Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687 || || || || || || |||| ||||| || |||| || || | || ||||||| | Sbjct 1592092 GATGACTCGATTGACGGCATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACT 1592151 Query 363688 GCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGC 363747 || ||||| |||||| | || ||||| ||||||| || | |||||| ||| Sbjct 1592152 GCCGGCGGTATTGGTCTCCACATTCACAACATTCGTGCTAAGGGCTCGTACATTGCTGGC 1592211 Query 363748 ACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGG 363807 || || || ||||| || | ||||||||||| || | | ||| ||||| | Sbjct 1592212 ACCAACGGCTATTCGAACGGTATTGTTCCCATGCTCCGCGCCTACGACGCCACTGCCCGT 1592271 Query 363808 TACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCAT 363867 || |||||||||||||| |||||| || || ||||| || || |||||||| Sbjct 1592272 TATGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGG 1592331 Query 363868 CATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGT 363927 || ||||| | || || || || || || || || ||| || || ||||| | ||| Sbjct 1592332 CACGCCGACGTCTTCGACTTCCTCGACCTTCGCAAGAACCACGGCAAGGAGGAGGTTCGT 1592391 Query 363928 GCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCA 363987 || ||||| || ||||| || || ||| | || |||| || ||| || || ||||| Sbjct 1592392 GCCCGTGACCTCTTCTACGCCCTCTGGATCTCCGACCTCTTCATGCGCCGTGTCGAGGCC 1592451 Query 363988 GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGT 364047 | | ||| | ||| | ||||| ||| || || || |||||||| || Sbjct 1592452 GACGGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTTTCCGACGTCCACTCG 1592511 Query 364048 GACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATT 364107 || || | || || || ||||| ||||| || ||||| |||| ||| ||||| || Sbjct 1592512 GAGGAGTTTGAGGCCCTCTACGAGAAGTACGAGCGTGAGGGCAAGGGTCGCAAGACCATC 1592571 Query 364108 CCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTAT 364167 || |||||||| ||||| |||||| | || | |||| ||||| || |||| Sbjct 1592572 AAGGCTCAGAAGCTTTGGTTCGCCATCCTCGAGGCCCAGACCGAGACTGGTGGCCCCTTC 1592631 Query 364168 ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAG 364227 ||| | ||||| || | |||||||||||| |||||||||||||| || || || || Sbjct 1592632 ATGCTCTACAAGGACGCTGCCAACCGCAAGTCAAACCAGCAGCACCTCGGCACCATCAAG 1592691 Query 364228 CAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGT 364287 | |||||| || || ||||| || || ||| | || ||||||||| ||||| || Sbjct 1592692 TCGTCCAACCTCTGCACTGAGATCATCGAGTACTCGGCCCCCGACGAGGTCGCCGTCTGC 1592751 Query 364288 AACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA-----AG-ATGGTACTTTTGACCAC 364341 |||||||| || | || || || || ||||| | || | || || | ||| | Sbjct 1592752 AACCTTGCCTCCCTTGCCCTCCCTGCCTTTGTCGACTTTGAGAACGGCACCTACGACTTC 1592811 Query 364342 CAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAG 364401 || | ||| | || | ||| | || ||| || |||||| || ||| Sbjct 1592812 AAGAAGCTTCACGAGATCACCAAGGTTGTTACCAAGAACCTCGACGCTGTCATCTCGCGC 1592871 Query 364402 AATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTT 364461 || || || || |||| || ||| | || || ||||| || ||||| | ||||| Sbjct 1592872 AACTACTACCCCGTTCCCGAGGCCAGGAACTCGAACATGCGCCACCGCCCCGTCGGTCTC 1592931 Query 364462 GGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGAC 364521 ||||| ||||| || || |||| || ||| ||| ||| | || || ||||| || Sbjct 1592932 GGTGTCCAGGGTCTTGCCGACGCCTTCATGGCCCTCCGCATGCCCTTCGACTCGCCCGAT 1592991 Query 364522 GCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAAT-GACTGCTTC 364580 ||||| || || ||||||| || || || || || || | || | | || Sbjct 1592992 GCTCGCCAGCTCAACCTCCAGATCTTCGAGACCATCTACCACGCTGCTCTCGAGT-CGTC 1593050 Query 364581 GTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCA 364640 ||| || |||| | ||| |||||| || | || ||||| || || |||| | Sbjct 1593051 GTGCGAGATGGCCGTCGAGATGGGCAAGTACCCTTCGTACGAGGGCTCGCCCATTTCTGA 1593110 Query 364641 GGGAAAATTCCAGTTTGATCTAT-GGAATGTCACGCCATCTGTCCGATGGAACTGGGATA 364699 ||| || ||||||| || || | || || | ||| | | || ||||||||||| Sbjct 1593111 GGGCAAGCTCCAGTTCGACCTCTGGGGCCGTGTCCCCA-CCGACCTCTGGAACTGGGACG 1593169 Query 364700 CGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTC---CCTCGTTACAGCGCCCA 364756 ||| ||| || || |||| ||| |||||||| ||||||| || |||| Sbjct 1593170 AGCTTCGTGAGAAGATTTCCCAGCACGGTGTCCGCAACTCGCTCCTCGTT---GCCCCCA 1593226 Query 364757 TGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAA 364816 ||||||| || || || | |||||||| || |||||||||||||| || | || Sbjct 1593227 TGCCCACTGCCTCGACCTCGCAGATCCTTGGCTGGAACGAGTGCTTCGAGCCCTACACTT 1593286 Query 364817 GCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAG 364876 | || || || || || || || || || || || | ||| || | || Sbjct 1593287 CGATGCTCTACTCGCGTCGTGTCCTCTCGGGTGACTTCCAGGTCGTCTGCCCCTGGCTCC 1593346 Query 364877 TCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCG 364936 || || || ||| || || |||| ||| |||||| | |||| ||| Sbjct 1593347 TCCGTGACCTCATTAACCTTGGTCTCTGGGACGACGAGATGAAGCAGCTCGTCATTGCCT 1593406 Query 364937 CTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAA 364996 | ||| || | ||| ||||||| ||| | || || || | ||| | || ||||| | Sbjct 1593407 CGGGTGGCTCGATCCAGCACATTCCCGGAATCCCCGACGACATCAAGTCCATCTACAAGA 1593466 Query 364997 CCGTATGGGAAATTTC-CATGCGAA--CTCTCATTGATATGGCGGCCGATCGCGGTGCTT 365053 |||| ||||| ||||| || ||| | ||||||| | || ||||| || || || | Sbjct 1593467 CCGTCTGGGAGATTTCACA---GAAGGCCGTCATTGACCTTGCTGCCGACCGTGGAGCCT 1593523 Query 365054 TTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACC-----TCCGCCAA 365108 | ||| |||| |||||| | ||| || || ||| ||||||| | | || | Sbjct 1593524 TCATCGATCAGTCGCAGTCGCTCAAC--ATCCA--CCTC-GCCAACCCCTCGTTCTCCCA 1593578 Query 365109 GCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGT 365157 ||| || || ||||| |||||||| ||||| ||| || ||||| ||| Sbjct 1593579 GCTCACCTCGATGCACTTCTACGGCTGGAAGCGCGGACTCAAGACTGGT 1593627 >seq1 Length=5305799 Score = 98.7 bits (108), Expect = 3e-15 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGA-ACGTCT 22496 || ||||| || ||||||||||||| || | | || | ||| || | |||||| Sbjct 776476 AAGAAGGCCGACTGGGCGCTGAAATACATCACAGACGAGATGCCGTTC-CGCACACGTCT 776418 Query 22497 TATTGCATTTGCTGTG-GTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTT 22555 ||||| ||||| ||| ||||||||||| |||||||| ||| | ||| || ||||| | Sbjct 776417 CATTGCGTTTGC-GTGCGTTGAAGGCATCTTCTTTTCGGGATCGTTTGCCGCCATCTTCT 776359 Query 22556 GGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAG 22615 |||| || || |||| | |||| || || || || ||||| ||| | || ||| | Sbjct 776358 GGCTCAAGAAGCGTGGTTTGATGCGCGGACTCACCTTCTCAAACGAGCTCATATCCCGCG 776299 Query 22616 ATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 | || || | || || || ||||||||| |||| || Sbjct 776298 ACGAAGGCATACACACGGACTTTGCGTGTTTGCTGTA 776262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353165820332