Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6 134 1e-26 seq4 118 1e-21 seq5 100 3e-16 seq1 93.3 4e-14 >seq6 Length=2644601 Score = 134 bits (148), Expect = 1e-26 Identities = 324/482 (67%), Gaps = 9/482 (2%) Strand=Plus/Plus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCG-CGACTTTCGCCGAGCG 46157 ||||| ||||||||||| | ||||||| | | | || | || | ||||||||||| Sbjct 75456 AAGAAGGCCGACTGGGCGCTCCGCTGGATCACCGAC-GAACAGTCGTCGTTCGCCGAGCG 75514 Query 46158 TATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTT 46217 | | | |||||||| || |||||| |||| || || || || ||| ||||||| Sbjct 75515 TCTCATTGCCTTTGCTGCCGTCGAGGGCATCTTCTTCTCGGGGTCGTTCGCCTCCATCTT 75574 Query 46218 TTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCG 46277 | |||| | ||| |||||||||| || || || |||||||| || ||||| Sbjct 75575 CTGGCTCAAGAAGCGTGGCCTCATGCCCGGACTCACATTCTCGAACGAGCTCATCTCGCG 75634 Query 46278 CGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAA 46337 ||||||||| || || || |||||||| || ||| || | | | | | | || Sbjct 75635 CGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTTGGCCACCTCCGCCGCCGCAC 75694 Query 46338 GCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTT 46397 | ||||||| | | || |||||||||| || |||||| ||||||| Sbjct 75695 CC---ACCCCGACATTATCAACAAGATTATCAAGGAGGCCGTCAAGATTGAGCAGGAGTT 75751 Query 46398 TTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGACTA 46457 | || | || ||||| | | || | ||||||||||| | |||||| | || Sbjct 75752 CCTCACCGAGGCCCTGCCTGTCTCGCTCATCGGCATGAACGCCAACCTCATGTGCCAGTA 75811 Query 46458 CATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGC-CGAAGCATTTTC-AC 46515 ||| |||||||| || ||||| |||||||| | | || || | |||| || | | || Sbjct 75812 CATTGAGTTTGTCGCCGACCGTCTGCTCGT-CGCCCTCGGCAACGAGAAG-ATGTACAAC 75869 Query 46516 GCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTC 46575 || ||| || || || || ||| | | ||||| ||| ||||||| | || |||||| Sbjct 75870 TCGACCAACCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGGCCAACTTTTTC 75929 Query 46576 GA 46577 || Sbjct 75930 GA 75931 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || | || | || |||||||| ||||||||||| || Sbjct 27616 GCCGCCACGAAGACGGAGGACGAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCAGA 27557 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||||| |||||||| || || |||| | ||||||||||| || || Sbjct 27556 AAGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGGCGCTGCTGGTCAGGGGG 27497 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| ||| ||||| | || | || || | ||||||| Sbjct 27496 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATGGTGTCCGACGACTCGAC 27437 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| ||||| || |||||||||||||| Sbjct 27436 CTCAAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 27389 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||| ||| | ||| || |||||| ||||||||||| Sbjct 27357 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 27298 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || | |||||||||||| || || || || || ||||| ||| || |||| Sbjct 27297 GCGAAAATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 27238 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAG 131213 | | || | || || | |||||||| || | ||| | ||| || || || || Sbjct 27237 ACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAG 27182 >seq4 Length=3045899 Score = 118 bits (130), Expect = 1e-21 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 131070 GGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129 |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||||| Sbjct 1996775 GGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGAT 1996716 Query 131130 TCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTC 131189 || || ||||| ||| ||| ||||| | || | || || | ||||||| || Sbjct 1996715 GCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTC 1996656 Query 131190 GACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTTATT 131247 || ||| | ||| || ||||| || || || ||||||||||||||| | ||||| || Sbjct 1996655 GAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGGCGGATTTTTTT 1996598 >seq5 Length=2819049 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | |||||||||||| || |||||||| || Sbjct 1774718 CCACCACGAAGGCGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1774659 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 1774658 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGG 1774599 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 1774598 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 1774539 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 |||| ||| | ||| || || || || || || || Sbjct 1774538 TCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTAAC 1774504 >seq1 Length=5305799 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACT 46146 |||||| | |||||||| ||||||||||| |||| | |||| ||| | || | Sbjct 776488 CCGTGCATCCGCAAGAAGGCCGACTGGGCGCTGAAATACATCA-CAGACGAGATGCCG-T 776431 Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 | ||| | ||| | | || |||||| || || ||| |||| ||||| || ||| Sbjct 776430 TCCGCACA-CGTCTCATTGCGTTTGCGTGCGTTGAAGGCATCTTCTTTTCGGGATCGTTT 776372 Query 46207 GCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAG 46266 ||||||||||| | |||| | || | |||| ||| || || || |||||| Sbjct 776371 GCCGCCATCTTCTGGCTCAAGAAGCGTGGTTTGATGCGCGGACTCACCTTCTCAAACGAG 776312 Query 46267 CTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGT 46308 || ||||| |||||||| ||| | || ||||||||||||||| Sbjct 776311 CTCATATCCCGCGACGAAGGCATACACACGGACTTTGCGTGT 776270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012646595840