Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6 120 4e-22 seq1 93.3 5e-14 >seq6 Length=2644601 Score = 120 bits (132), Expect = 4e-22 Identities = 180/250 (72%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||| ||| ||||||||||| | || | ||||| || || |||||| Sbjct 75664 CAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAGT 75605 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| ||||||||||| || ||||| || ||||| || || || || || ||||| Sbjct 75604 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAAG 75545 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG-CTG-TCAT--G 32836 || || || || || ||||||||||| || | ||| | | || || ||| || | | Sbjct 75544 ATGCCCTCGACGGCAGCAAAGGCAATGAGACGCTCGGC--GAACGACGACTGTTCGTCGG 75487 Query 32837 T-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 32895 | ||||| | ||||| ||||||||||| || | || || || ||||| || || | Sbjct 75486 TGATCCAGCGGAGCGCCCAGTCGGCCTTCTTCTTAATGCAGGGAATAGTCTCGATGGCCT 75427 Query 32896 TAAAGAGATA 32905 | ||||| || Sbjct 75426 TGAAGAGGTA 75417 >seq1 Length=5305799 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/219 (70%), Gaps = 10/219 (5%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| |||||| || || || ||||| || ||||| | || | ||||| || | Sbjct 776263 ACAGCAAACACGCAAAGTCCGTGTGTATGCCTTCGTCGCGGGATATGAGCTCGTTTGAGA 776322 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 | ||||||||| |||| | |||||||| || ||||| || |||| ||||| ||||| | Sbjct 776323 AGGTGAGTCCGCGCATCAAACCACGCTTCTTGAGCCAGAAGATGGCGGCAAACGATCCCG 776382 Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG----CG 32828 ||||||| || ||||| || |||||| ||||| || | | | | ||| | || Sbjct 776383 AAAAGAAGATGCCTTCAACGCACGCAAACGCAATGAGACG-TGTGCGGAACGGCATCTCG 776441 Query 32829 -CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866 |||| |||||| || | ||||| ||||||||||| Sbjct 776442 TCTGTGATGTAT----TTCAGCGCCCAGTCGGCCTTCTT 776476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631794069600