Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6 109 5e-19 seq4 87.8 2e-12 seq5 84.2 2e-11 >seq6 Length=2644601 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || || | || ||| | ||| | |||| Sbjct 27185 ACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAGGCC 27244 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| ||||| || || |||||||| || |||||||| Sbjct 27245 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTTATTTTCGCCGGCAAG 27304 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | ||||| ||| ||| ||||||| |||||||| || || || ||||| Sbjct 27305 CAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCCAC 27357 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | ||||| || || |||| ||||| || || | | Sbjct 27389 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCG 27448 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || ||||||||||| || || || || || Sbjct 27449 GACACCATTGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 27508 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| |||||||| || ||| | |||||| |||||| | || || |||||| Sbjct 27509 CAGCGCCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACTACAAC 27568 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 27569 ATTCAGAAGGAGTCTAC 27585 >seq4 Length=3045899 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || |||| || || || || | | Sbjct 1996611 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 1996670 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || ||||||||||| || || || || || Sbjct 1996671 GACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1996730 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 || |||||||| || |||||||| ||| | ||||| ||||||| | || || |||| Sbjct 1996731 CAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 1996788 >seq5 Length=2819049 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290 ||||| || | || || || || |||| || || ||||| | | || ||| | ||| Sbjct 1774504 GTTAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACCATCGAC 1774563 Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350 | |||| || || || ||||||||||| || || || || || || || || || Sbjct 1774564 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATC 1774623 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 || |||||||| ||| | ||||| ||||||| | || || |||||||| || || || Sbjct 1774624 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAG 1774683 Query 22411 TCCACC 22416 || ||| Sbjct 1774684 TCGACC 1774689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727866998690