Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5 132 1e-25 seq1 105 1e-17 seq6 100 6e-16 >seq5 Length=2819049 Score = 132 bits (146), Expect = 1e-25 Identities = 443/679 (65%), Gaps = 34/679 (5%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 ||||| || || |||||||||||||||||||| ||||| | ||||||||||| | || Sbjct 1198436 GGTTCGCTCTCCGGTGGTTGGAAGATGAAGCTCGCCCTTGCCCGCGCCATTCTCTTCCGC 1198377 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 ||||| | || || || || ||||| || |||||| | ||| | |||||| ||||| Sbjct 1198376 GCCGACATTCTCCTCCTCGACGAGCCCACTAACCACCTCGACGTCGTCAACGTCACCTGG 1198317 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | |||||| ||| || | | | | || |||| ||||| |||||||| Sbjct 1198316 CTCATCGACTACCTCACCTCGCTCACCACCTGTACCTCGATCATGGTCTCGCACGACTCG 1198257 Query 279879 GGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCC 279938 | |||||| | | | | | | || | ||| || | ||| || |||||| Sbjct 1198256 GACTTCCTTAACCGCACCATCACCGACGTCCTCCAC-ATCAACAACTTC--AAGCTC--- 1198203 Query 279939 AAGC---ACATCGGCAACCTGTCTGCTTTCGTGG-CAAAGCGCCCTGAGGCGGCCGCCTA 279994 |||| || ||||||||| || ||||| | | | | ||| ||||| ||||| Sbjct 1198202 AAGCGCTACCCCGGCAACCTTGACGCCTTCGTCGACCACGTTCCC-GAGGCCCGTGCCTA 1198144 Query 279995 CTATGACCTGAAGGACGCCACCGCC---AAGTGGGAATTCCCTGAGCCAGGGTTTCTGGA 280051 || | || | | || | | |||| | |||| || || |||| || Sbjct 1198143 CTTCCAGCTTGACGTCGGAGAGGACTACAAGTTCAAGCTCCCCGACCCTCCCCTTCTTGA 1198084 Query 280052 GGGCATCACATCAAAGGA----TCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTT 280107 || ||| | ||||| |||| || | ||| | |||||| || | Sbjct 1198083 CGGTGTCAAGACCAAGGAGAAGTCGC----TCCTCAAGATGAAGAACGTCTCGTTCCAGT 1198028 Query 280108 ATCCCAATGGCCCC----AACA--TCTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACT 280161 | |||| | |||| | || ||| | || ||||| |||||||| | | Sbjct 1198027 ACCCCACCGCCCCCGTCCAGCAGCTCTACGACA---TCAACCTCCAGGTTTCGCTCTCGT 1197971 Query 280162 CACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGA 280221 | || ||| ||| |||| ||||| ||| |||| ||||||||||| |||| |||| | Sbjct 1197970 CGCGTGTTGCCGTCCTTGGTCCCAACGGTTCGGGCAAGTCTACCCTCGTCAAGCTCCTTA 1197911 Query 280222 CTGGCGAGACCCAGGCCACTGAGGGGT---CCGTTTGGAAGCATCCCAACATGCGGATGG 280278 ||||||||||| || ||| |||| |||| |||||||| || ||| | || | Sbjct 1197910 CTGGCGAGACCGAGCCCAACAAGGGCGGAACCGTCTGGAAGCACCCTAACCTCGTCATTG 1197851 Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338 |||||| || ||||||||||||||||||||||| | ||||| ||| |||||| | Sbjct 1197850 GTTACGTTGCCCAGCACGCTTTCCACCACATCGACCAGCACCTCGACTCGACTCCCCTCG 1197791 Query 280339 AATACATTCAGTGGCGCTA 280357 | ||||| | ||||| || Sbjct 1197790 AGTACATGCTCTGGCGTTA 1197772 Score = 122 bits (134), Expect = 2e-22 Identities = 432/669 (65%), Gaps = 26/669 (4%) Strand=Plus/Minus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 || || || |||||||||||||||||||| | || |||| ||||| || | ||||| Sbjct 2240834 TCGCTCTCCGGTGGTTGGAAGATGAAGCTCGAGCTTGCTCGTGCCATGCTTATCGGTGCC 2240775 Query 279762 GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTA 279821 || | || || || || ||||| ||||||||| | ||| | | ||| |||||||| Sbjct 2240774 GACATTCTCCTCCTCGACGAGCCTACCAACCACCTCGACGTCCAGACCGTCGCCTGGCTC 2240715 Query 279822 GTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGC 279881 | | |||||| || || | | | | | | || ||||| |||||||||||| Sbjct 2240714 GAGAACTACCTTGTCAACCTCCCCCAGATGACCTGCATGATCGTCTCGCACGACTCTGGC 2240655 Query 279882 TTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAG 279941 ||||| || |||||| | | ||| || ||||| ||||| || |||| | || | Sbjct 2240654 TTCCTTGACAACGTGTGTACCGACATTATGCACTACGAGCAGAA---GAAGATTGCCTAC 2240598 Query 279942 CACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC------TAC 279995 ||| |||||||| || || || | |||| || | |||||| ||| Sbjct 2240597 TACAAGGGCAACCTCTCCAAGTTTGTCG---AGCG---TGTCCCCGCCGCCAAGTCGTAC 2240544 Query 279996 TATGACCTGAAGGACGCCACCGC---CAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 || ||| | ||||||| | ||||| ||||| || || | || | Sbjct 2240543 TACACCCTT---GCCGCCACCTCGATCAAGTTCTCGTTCCCCCCTCCTGGATCGCTCGTT 2240487 Query 280053 GGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCC 280112 || || || || || | || | |||||| || | |||| | || ||| Sbjct 2240486 GGTGTCCGCTCCAACACCCGTTCGATTCTCAAGCTCTCGAACGCCACCTTCACCTACCCC 2240427 Query 280113 AATGGCCCCAACATCT---TCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATT 280169 || | || | || ||| | | || || | | ||| | || || | Sbjct 2240426 GGTGCCGCCCGCCCCTCGCTCAAGAACGCCACCTGCTCGCTCTCTCTCTCGTCGCGTGTC 2240367 Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 |||||| | || ||||| ||||| || ||||| ||||| ||||| |||| ||||| ||| Sbjct 2240366 GGTGTCGTCGGCCCCAACGGTGCCGGCAAGTCGACCCTCATCAAGCTCCTCACTGGTGAG 2240307 Query 280230 ACCCAGGCCACTGAGGGGT-CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 ||| | || | | |||| |||| ||||| ||| | || | | ||||||||| Sbjct 2240306 ACC-ATTCCTCAGGAGGGTACCGTCCACAAGCACCCCGCTCTCCGTGTCGGTTACGTCGC 2240248 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 |||||||| |||||||||||| | | ||||| |||| |||| || || ||||| || Sbjct 2240247 CCAGCACGCCTTCCACCACATCAACCAGCACCTCGACAAGACTGCTGTTCAGTACATCCA 2240188 Query 280349 GTGGCGCTA 280357 |||||| || Sbjct 2240187 GTGGCGTTA 2240179 Score = 93.3 bits (102), Expect = 9e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || |||||||||||||| | ||| | || || || |||| Sbjct 1197401 ATGCGCGGTCTCTCCGGTGGCCAGAAGGTCAAGGTCGTCCTTGGTGCCGCCACCTGGCGC 1197342 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAG 280823 | ||| ||||| ||| ||||||||||||||||||||| || ||||||||| Sbjct 1197341 CGCCCCCACGTCATCTGTCTCGACGAGCCTACCAACTACCTCGACCGCGAG 1197291 >seq1 Length=5305799 Score = 105 bits (116), Expect = 1e-17 Identities = 210/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 218515 CCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATT 218574 || ||||| ||| ||||||||||||| || ||||| | || ||||| || Sbjct 1241741 CCCGACTTTATCAACAAGGAGCTCATCCTCTTCTCCATGGCCGACAACATCCGTTCGATC 1241682 Query 218575 CCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAG 218634 ||| || | || || |||||||| || || || | |||| | | |||||| Sbjct 1241681 CCCTCAGTAGCCGACGGTCTCAAGCCTGGTCAACGCAAAGTTATCTTCGGCTGCTTCAAG 1241622 Query 218635 CGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCT 218694 ||||||| | ||||| ||||||| ||| || ||| || | ||||| | || Sbjct 1241621 AGGAACCTCACCAAGGAAATCAAGGTCGGACAGCTTAGTGGCTACATCTCCGAGAACACT 1241562 Query 218695 GGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTAT 218754 | ||||| ||||||||| ||| ||||| |||| || || | || ||| ||| | Sbjct 1241561 GCGTACCACCACGGTGAGGTGAGCTTGCAGTCGACCATCGTCGGTCTCGCTCAGAACTTT 1241502 Query 218755 GTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTG 218814 || ||||| |||||||| ||| |||| ||| | ||| || || ||| |||| | | Sbjct 1241501 GTCGGCAGCAACAACATCAACCTGCTCGCCCCGATCGGACAATTCGGTACTCGCATGTCT 1241442 Query 218815 GGTGGAAAGGA 218825 ||||||||||| Sbjct 1241441 GGTGGAAAGGA 1241431 >seq6 Length=2644601 Score = 100 bits (110), Expect = 6e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 251545 TATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATG 251604 ||| | || ||||| ||||| || || | |||||||| ||| ||||| | ||||||| Sbjct 75949 TATGCCGAGACACGCGACTCGAAAAAGTTGGCCTTGCCCTGCAGCGAGATCATCTCCATG 75890 Query 251605 AAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGG 251664 |||||||||||||| || | |||||| ||| | ||| || || |||| | ||| Sbjct 75889 AAGTCGAAGGGGTTGGTCGAGTTGTACATCTTCTCGTTGCCGAGGGCGACGAGCAGACGG 75830 Query 251665 TCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 || || |||||||| | ||||| | ||| || | | ||||||||| || Sbjct 75829 TCGGCGACAAACTCAATGTACTGGCACATGAGGTTGGCGTTCATGCCGAT 75780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836457601866