Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq6 161 2e-34 seq5 161 2e-34 seq4 138 2e-27 >seq6 Length=2644601 Score = 161 bits (178), Expect = 2e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || |||||||| || |||||||| || |||||| Sbjct 27387 CCACCACGAAGGCGGAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 27328 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || |||||||| ||| Sbjct 27327 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGGGGA 27268 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 27267 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 27208 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || | ||||||||| || ||||| ||| Sbjct 27207 TCAAGGGTGATGGTCTTGCCCGTAAGG 27181 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || ||||| || || ||||| || || || Sbjct 27615 CCGCCACGAAGACGGAGGACGAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCAGAA 27556 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || || || | || ||||| || || Sbjct 27555 AGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGGCGCTGCTGGTCAGGGGGG 27496 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| || |||||||| | || || || Sbjct 27495 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATGGTGTCCGACGACTCGACC 27436 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || || ||||||||||| |||||||| Sbjct 27435 TCAAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 27389 Score = 116 bits (128), Expect = 7e-21 Identities = 312/470 (66%), Gaps = 8/470 (2%) Strand=Plus/Minus Query 9937 TGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGA 9996 |||| |||| ||| ||| |||| || || |||||| ||||||| |||||||| | Sbjct 75966 TGACACCCGACTTGGCGTATGCCGAGACACGCGACTCGAAAAAGTTGGCCTTGCCCTGCA 75907 Query 9997 GGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGA 10056 | || || | |||||||||||| |||||||| | | || ||| || |||| Sbjct 75906 GCGAGATCATCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTACATCTTCTCGTTGCCGA 75847 Query 10057 GTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCA 10116 | || || | ||||| || || ||||| |||||||||| ||| |||| | ||||| Sbjct 75846 GGGCGACGAGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGGTTGGCGTTCA 75787 Query 10117 TGCCAATCAT-GCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCT 10175 |||| || | | | |||| | ||| ||| | ||| |||| || | ||| || Sbjct 75786 TGCCGATGAGCGAGACAGGC-AGGGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCC 75728 Query 10176 TCCTCGACGATGCTCTTTACCACGTCAAGG-GACAGCTTGTTCTCGAGCTTCGAATACAG 10234 |||| || || | || | | ||| || | || | ||| | | | || Sbjct 75727 TCCTTGATAATCTTGTTGATAATGTCGGGGTGGGTGCGGCGGCG-GAGGTGGCCAAAGAG 75669 Query 10235 GAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACC 10294 ||| |||| | |||||| ||||||||||| ||||| |||||| || || Sbjct 75668 GAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAATGT 75609 Query 10295 CAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAA 10354 || ||||||||||| || || || |||||||| |||| | ||||||||| |||| Sbjct 75608 GAGTCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGACCCCGAGA- 75550 Query 10355 CAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA 10402 |||||| ||||| ||| | |||| | ||| ||||| ||||| || Sbjct 75549 -AGAAGATGCCCTCGACGGCAGCAAAGGCAATGAGACGCTCGGCGAACGA 75501 >seq5 Length=2819049 Score = 161 bits (178), Expect = 2e-34 Identities = 668/1036 (64%), Gaps = 31/1036 (3%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || ||||| | ||||||| | ||| ||| ||| ||||| | || || ||||||||| Sbjct 1197772 TAACGCCAGAGCATGTACTCGAGGGGAGTCGAGTCGAGGTGCTGGTCGATGTGGTGGAAA 1197831 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAG---AGCCCCGA 225094 || |||||||| ||||| | ||| | ||| || |||||||| || | |||| Sbjct 1197832 GCGTGCTGGGCAACGTAACCAATGACGAGGTTAGGGTGCTTCCAGACGGTTCCGCCCTTG 1197891 Query 225095 GTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154 | || | | |||||| || |||| ||||| ||| |||| |||||||| ||| ||||| Sbjct 1197892 TTGGGCTCGGTCTCGCCAGTAAGGAGCTTGACGAGGGTAGACTTGCCCGAACCGTTGGGA 1197951 Query 225155 CCAATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCT-- 225212 |||| ||| ||| || || || | | |||||| ||| | || | || || Sbjct 1197952 CCAAGGACGGCAACACGCGACGAGAGCGAAACCTGGAGGTTGATGTCGTAGAGCTGCTGG 1198011 Query 225213 -CAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTG 225271 | ||| | || |||| || | ||| || ||| | || | |||||| Sbjct 1198012 ACGGGGGCGGTGGGGTACTGGAACGAGACGTTCTTCATCTTGAGGAGCGACTTCTCCTTG 1198071 Query 225272 GAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTG--GT-CACCGCGTCC 225328 | | | ||| || || | || ||||||| || ||||| || | | || | Sbjct 1198072 GTCTTGACACCGTCAAGAAGGGGAGGGTCGGGGAGCTTGAACTTGTAGTCCTCTCCGACG 1198131 Query 225329 TTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCG 225388 | || | | |||| | |||||||| | | ||||| || ||||| ||| Sbjct 1198132 TCAAGCTGGAAGTAGGCACGGGCCTCGGGAACGTGGTCGACGAAGGCGTCAAGGTTGCCG 1198191 Query 225389 AGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGC-GTC 225447 ||| | ||||||||| ||| || || | || | || | ||| || Sbjct 1198192 GGGTAGCGCTTGAGCTTGAAGTTGTTGATGTGGAGGAC----GTCGGTGATGGTGCGGTT 1198247 Query 225448 AAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGAGGT 225506 ||||||| | |||||||| || || ||||| || | ||| | | || || |||||| Sbjct 1198248 AAGGAAGTCCGAGTCGTGCGAGACCATGATCGAGGTACA-GGTGGTGAGCGAGGTGAGGT 1198306 Query 225507 GCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCA 225566 ||||||||| | |||||| |||||| | |||||| || || ||||| || || | Sbjct 1198307 AGTCGATGAGCCAGGTGACGTTGACGACGTCGAGGTGGTTAGTGGGCTCGTCGAGGAGGA 1198366 Query 225567 GGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGG 225626 | ||||| || | ||| |||||||| | || | |||||||| ||||| || |||| Sbjct 1198367 GAATGTCGGCGCGGAAGAGAATGGCGCGGGCAAGGGCGAGCTTCATCTTCCAACCACCGG 1198426 Query 225627 ACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCGTCT 225686 | || || ||||| | ||||| | | ||| |||||| | | ||| ||| Sbjct 1198427 AGAGCGAACCGATAGCGTGCTGCTGCTTCTCCTGGTCGAAGCCGACCGACTCGAGGGTCG 1198486 Query 225687 GGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGA-GAGGTAATCA 225745 || || |||||| | | |||| || ||| | ||||| ||| || | || Sbjct 1198487 AGACGATCTCCTCGGGGGTG--GCGA--GGAGACGCT--TGTCGG-CGAGGACCCAGTCG 1198539 Query 225746 TATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGC 225805 | || || | | || |||| |||||||| | ||||| | || |||| | Sbjct 1198540 ACAATGGAGATAGACTCCTCGGAGCCGTCGATGTCGTGCTGGACGTAGAAGGTACGGACC 1198599 Query 225806 TGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTC 225865 || || | |||||||||||||| | |||| || |||| || | ||||| | Sbjct 1198600 TGCGAGGGGTCGGGGAAGCCCTCGACCTGGTTGTTGACAATGGCGTTCATGAGGGTCGAC 1198659 Query 225866 TTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGG--C 225923 || || | ||||| | || | ||| ||||| | | || ||||||| |||| Sbjct 1198660 TTTCCGGTACCGTTACGGCCAAGGAGACCGTAGCGGTGGCCACGCTTGAGACGGAGGTTG 1198719 Query 225924 GCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCG-CAA--TCGCACA 225980 ||||| || || ||||||||| |||| ||||||||| ||||| | ||| | ||| | Sbjct 1198720 GCGTG--GTGGAGAAGGATCTTGGCACCGTAGGCAAGGTTGAACTGGTCAATGTTGCAGA 1198777 Query 225981 GGTCCTCACCCTCCTC 225996 |||||||||||||||| Sbjct 1198778 GGTCCTCACCCTCCTC 1198793 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || |||||||| || || || Sbjct 1774718 CCACCACGAAGGCGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1774659 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||| | || ||||| || || Sbjct 1774658 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGG 1774599 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 1774598 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 1774539 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 || | ||||||||| || ||||| |||||||| || Sbjct 1774538 TCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTAAC 1774504 Score = 100 bits (110), Expect = 5e-16 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 225410 TTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGAC 225469 |||| |||||| || | ||| | | ||||| ||||||||||||||||||||| || Sbjct 2240611 TTCTGCTCGTAGTGCATAATGTCGGTACACACGTTGTCAAGGAAGCCAGAGTCGTGCGAG 2240670 Query 225470 ACAATGATGGACGACACGTTCGTCAGGCCCTTG---AGGTGCGTGATGAGCCATGCCACG 225526 || || ||| | | || | | ||| ||| |||| | |||||| || ||| Sbjct 2240671 ACGATCATGCAGGTCATCTGGGGGAGG---TTGACAAGGTAGTTCTCGAGCCAGGCGACG 2240727 Query 225527 TTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGG 225586 | |||||| | |||||| ||||| ||||| || || || ||||| ||| | || || Sbjct 2240728 GTCTGGACGTCGAGGTGGTTGGTAGGCTCGTCGAGGAGGAGAATGTCGGCACCGATAAGC 2240787 Query 225587 ATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGA 225638 ||||| || | || |||||||| ||||| || ||||| || ||| ||| Sbjct 2240788 ATGGCACGAGCAAGCTCGAGCTTCATCTTCCAACCACCGGAGAGCGAGGCGA 2240839 Score = 87.8 bits (96), Expect = 3e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 224507 AGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGC 224566 |||||||||||||| ||| |||| || ||||| || || ||| |||||||||| || Sbjct 1197286 AGCGACTCGCGGTCGAGGTAGTTGGTAGGCTCGTCGAGACAGATGACGTGGGGGCGGCGC 1197345 Query 224567 CACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGAT 224622 || ||| ||||||| || | ||| |||||||| || || ||||| ||||| || Sbjct 1197346 CAGGTGGCGGCACCAAGGACGACCTTGACCTTCTGGCCACCGGAGAGACCGCGCAT 1197401 >seq4 Length=3045899 Score = 138 bits (152), Expect = 2e-27 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || || || || | || || || | |||||| |||||||| || || | || ||| Sbjct 1996786 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGG 1996727 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || ||||| |||||||| || ||||| ||||||||| ||||||||||| | Sbjct 1996726 TCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAA 1996667 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 1996666 GACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1996611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622100472720