Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 8e-16 seq4 82.4 6e-11 >seq6 Length=2644601 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || ||||||||||| || | ||| || ||| || || || || || Sbjct 27585 GTAGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCG 27526 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || ||||| ||||| || || ||||| || ||||| ||||| || Sbjct 27525 GCAAAGATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 27466 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || ||||| || | ||| | || |||||||||||||| Sbjct 27465 ACGTTGTCAATGGTGTCCGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAGAGTC 27406 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 27405 TTGACGAAAATCTGCAT 27389 >seq4 Length=3045899 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || ||| |||| |||||||| ||||| || || ||||| || ||| Sbjct 1996765 TCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 1996706 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | || | |||||| | || ||||| || | ||| | Sbjct 1996705 TCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATG 1996646 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 114385 || |||||||| || || || || |||||||||||||| Sbjct 1996645 GTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGGC 1996608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134266869912