Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 502 5e-137 seq6 369 7e-97 seq1 123 5e-23 >seq3 Length=3131490 Score = 502 bits (556), Expect = 5e-137 Identities = 1176/1764 (67%), Gaps = 73/1764 (4%) Strand=Plus/Minus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933 || |||||| ||||| ||| |||| ||||| | || || || || | | |||| Sbjct 1593552 GATGTTGAGCGACTGCGACTGATCGATGAAGGCTCCACGGTCGGCAGCAAGGTCAATGAC 1593493 Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCC 243993 | ||||||| || ||||| | | ||||||||||||| ||||| || ||||||| || Sbjct 1593492 GGCCTTCTGTGAAATCTCCCAGACGGTCTTGTAGATGGACTTGATGTCGTCGGGGATTCC 1593433 Query 243994 TTCGATGTTCTGCACCGAGCC-CTTGTGG--ACGATGAGCTGGGTGCGCATGTTATCGTT 244050 |||| ||| | |||||| | | || | || |||||| | ||| | |||| Sbjct 1593432 GGGAATGTGCTGGATCGAGCCACCCGAGGCAATGACGAGCTGCTT---CATCTCGTCGTC 1593376 Query 244051 CCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTC---ACCACCTGAAACTC 244107 ||| || || | | || | | || ||| ||| | || ||||| || || Sbjct 1593375 CCAGAGACCAAGGTTAATGAG-GTCACGG--AGGAGCCAGGGGCAGACGACCTGGAAGTC 1593319 Query 244108 TCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTT 244167 ||||| || || || ||| |||||| | || ||||||| || ||| | Sbjct 1593318 ACCCGAGAGGACACGACGCGAGTAGAGCATCGAAGTGTAGGGCTCGAAGCACTCGTTCCA 1593259 Query 244168 GCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCAC 244227 ||| || ||||||| || ||||| |||||||| | || || || ||| | || Sbjct 1593258 GCCAAGGATCTGCGAGGTCGAGGCAGTGGGCATGGGGGCAACGAGGAGCGAGTTGCGGAC 1593199 Query 244228 GCCGTGCCTCTGGATGCGGAGTCTG-------AGCTCGTTCCAGTCCCACATGCCCGAGA 244280 |||||| || | | ||| ||||||| ||||| ||| | | | | | Sbjct 1593198 ACCGTGC-------TGGGAAATCTTCTCACGAAGCTCGTCCCAGTTCCAGAGGTCGGTGG 1593146 Query 244281 GGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGC 244340 || | ||||||| | ||| ||||| ||| |||| | ||| || Sbjct 1593145 GGACAC---------GGCCCCAGAGGTCGAACTGGAGCTTGCCCTCAGAAATGGGCGAGC 1593095 Query 244341 CCTCGTAGGTCGGGTAGG-GACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCG 244399 ||||||| | ||||| | || || || || ||| || || | ||||| || Sbjct 1593094 CCTCGTACGAAGGGTACTTGCCCATCTCGACGG-CCATCTCGCACGACGACTCGAGAGCA 1593036 Query 244400 GCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAG 244459 |||| ||||||||||||||||||| ||| | | ||| || | | || |||| Sbjct 1593035 GCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGGCGAGCATCGGGCGAGTCGAAG 1592976 Query 244460 GGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTG 244519 || |||| | ||||||| ||||||| || ||||| || |||| |||| ||| | | Sbjct 1592975 GGCATGCGGAGGGCCATGAAGGCGTCGGCAAGACCCTGGACACCGAGACCGACGGGGCGG 1592916 Query 244520 TGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTG 244579 || ||| |||| ||| | |||| ||||| |||||||| |||||| ||| || | Sbjct 1592915 TGGCGCATGTTCGAGTTCCTGGCCTCGGGAACGGGGTAGTAGTTGCGCGAGATGACAGCG 1592856 Query 244580 TTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAG 244639 | |||||| ||| | | | || ||| ||| || |||||||| | | Sbjct 1592855 TCGAGGTTCTTGGTAACAACCTTGGTGATCTCGTGAAGCTTCTTGAAGTCGTAGGTGCCG 1592796 Query 244640 GGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAG 244699 || | ||| |||| | |||||| | | ||| ||||||||| Sbjct 1592795 TTCTCAAAGTCGA------------CAAAGGCAGGGAGGGCAAGGGAGGCAAGGTTGCAG 1592748 Query 244700 ACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTG 244759 ||||| ||||| || | | | ||||| || ||||| ||||||||||| ||||| Sbjct 1592747 ACGGCGACCTCGTCGGGGGCCGAGTACTCGATGATCTCAGTGCAGAGGTTGGACGACTTG 1592688 Query 244760 ATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAG 244819 |||||||| |||||||| || || |||||| |||| ||||||||||||||||||||| Sbjct 1592687 ATGGTGCCGAGGTGCTGCTGGTTTGACTTGCGGTTGGCAGCGTCCTTGTAGAGCATGAAG 1592628 Query 244820 GGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 || || || |||||| |||||| |||||| | | ||| || | | |||||||| Sbjct 1592627 GGGCCACCAGTCTCGGTCTGGGCCTCGAGGATGGCGAACCAAAGCTTCTGAGCCTTGATG 1592568 Query 244880 GTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCC 244939 ||| ||||| |||||||||| |||||| ||| |||||||| ||||| || Sbjct 1592567 GTCTTGCGACCCTTGCCCTCACGCTCGTACTTCTCGTAGAGGGCCTCAAACTC---CTCC 1592511 Query 244940 CA---GACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCG 244996 | ||| ||| |||||||||||| || ||||||||||| |||| || ||| || Sbjct 1592510 GAGTGGACGTCGGAAAGGCCGGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCG 1592451 Query 244997 TCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTC 245056 ||| ||| | ||||||||||||||| |||||||||||| | ||||||||| | || Sbjct 1592450 GCCTCGACACGGCGCATGAAGAGGTCGGAGATCCAGAGGGCGTAGAAGAGGTCACGGGCA 1592391 Query 245057 CTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGC 245116 | ||| ||| ||| |||||| | || || | ||||| ||||||||| ||||| Sbjct 1592390 CGAACCTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAAGTCGAAGACGTCGGCGTGC 1592331 Query 245117 CAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATC 245176 |||||||| | ||||| || | ||| || || ||||||||||| |||||||| | | Sbjct 1592330 CAGGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGA----C 1592275 Query 245177 CTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTT 245232 | || || |||| | || ||| || | || || || ||||| || | |||||| Sbjct 1592274 ATAACGGGCAGTGGCGTCGTAGGCGCGGAGCATGGGAACAATACCGTTCGAATAGCCGTT 1592215 Query 245233 GGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGA---TGGACATGCCTAGTCC 245289 |||||| ||||| | |||||| | | | |||| ||| |||| | || | || Sbjct 1592214 GGTGCCAGCAATGTACGAGCCCTTAGCACGAATGTTG-TGAATGTGGAGA--CCAATACC 1592158 Query 245290 GCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCT 245349 |||||| ||||||||| |||||||| |||||| |||||| ||||| || || Sbjct 1592157 GCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATGCCGTCAATCGA 1592098 Query 245350 GTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTT 245409 ||| ||||||| || || ||||| || |||| |||||| | |||| | | | ||| Sbjct 1592097 GTCATCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTGGGGGGTACCGGCGTT 1592038 Query 245410 GAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAG 245469 ||| || || ||| ||||||||| ||||| || ||| | || ||| |||| | Sbjct 1592037 GAAGAGGGTAGGGGAGGCGTGGGTGAAGTAACGCTCCGACATGAGGTTGTAGGTCTCAAT 1591978 Query 245470 CAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGG 245529 | ||| ||||||||||||||||| | | | | ||||| |||||||||| Sbjct 1591977 GACCTTGTCAATGTTGTCGCCGTGGATACCAATCGAGACACGCATGATCATGTGCTGGGG 1591918 Query 245530 CGTCTCGATGGGTCCCTCGGGTCCCT--TGAGCATGTAGGAGCGCTCGAGCGTCTTGAAC 245587 |||| | | || | ||| | ||| | ||| ||||||||||| |||||||| Sbjct 1591917 ACGCTCG--GCGACCTTGCCGTCGATGCGGAGGAGGTACGAGCGCTCGAGGGTCTTGAAA 1591860 Query 245588 CCAAAGTACGAGTAGCCAAAGTCG 245611 || ||||| |||| |||||||| Sbjct 1591859 CCGAAGTAGTTGTAGGCAAAGTCG 1591836 >seq6 Length=2644601 Score = 369 bits (408), Expect = 7e-97 Identities = 600/848 (71%), Gaps = 52/848 (6%) Strand=Plus/Plus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 ||||||||||| ||| || ||||||||||||||||||| |||| ||| ||| Sbjct 75120 TACAAGAAGGCCCAGGCGTCGTTCTGGACCGCCGAGGAGATTAACCTTGCCCCCGACCTT 75179 Query 42372 GCCGGCTGGGAGTCACTGTCTGAGAACGAAAA-----GTTT-TTCCTCAAAAACATACTG 42425 || |||||| || || | |||| || ||| || || | || | || Sbjct 75180 CACGACTGGGACA-ACAAGCTCA--ACGATAATGAGCGTTACTTTATCGAGCACGTCCTT 75236 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 ||||| |||||||| || ||||| || ||||| |||||||| | | | ||| Sbjct 75237 GCCTTTTTCGCCGCGTCGGACGGAATCGTCAACGAGAACCTCGTCGAGCGCTTCTGCGGC 75296 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 ||||| ||| ||||| |||||||||||||||||| || |||||| | Sbjct 75297 GAGGTCCAGATTGCAGAGGCCAAGACCTTCTACGGCTTCCAGATCATGATGGAGAACATC 75356 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGAT----CCCGTCGAGCG 42601 ||||| ||| ||| | || || |||| ||||||| || |||| || | Sbjct 75357 CACTCGGAGACCTACTCGCTTCTCATCGACACCTACATCCGCGACACTGCCCGCCGCCAG 75416 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || | | ||||||||||| ||||| || |||||||| ||||||||||| |||||||| Sbjct 75417 TACC----TCTTCAAGGCCATCGAGACTATTCCCTGCATTAAGAAGAAGGCCGACTGGGC 75472 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAA------CGTTCGGCGAGAGGCTGGTAGCCTT 42715 |||| ||||||| |||||| | |||||| |||| | || | ||||| Sbjct 75473 GCTCCGCTGGATCA------CCGACGAACAGTCGTCGTTCGCCGAGCGTCTCATTGCCTT 75526 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 | | |||||||||||||||||||||||||| | |||||||||||||||||||||||| | Sbjct 75527 TGCTGCCGTCGAGGGCATCTTCTTCTCGGGGTCGTTCGCCTCCATCTTCTGGCTCAAGAA 75586 Query 42776 G-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | || || |||||||||||||| ||||||||||| |||||| | |||||||| | Sbjct 75587 GCGTGGCCTC-ATGCCCGGACTCACATTCTCGAACGAGCTCATCTCGCGCGACGAGGGTC 75645 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAG-----GCACAAGCCCTC 42889 | || | |||||||||||||||| ||| |||||||| | |||| ||| | Sbjct 75646 TCCACACCGACTTTGCCTGCCTCC---TCTTTGGCCACCTCCGCCGCCGCACCCACCC-C 75701 Query 42890 GA-AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 || | | || || |||| ||||||||| |||| ||| |||||||||||| Sbjct 75702 GACATTA-----TCAACAAGATTATCAAGGAGGCCGTCAAGATTGAGCAGGAGTTCCTCA 75756 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCC 43008 | || | ||||| || || || ||||||||||| | ||||||||||| ||||||| Sbjct 75757 CCGAGGCCCTGCCTGTCTCGCTCATCGGCATGAACGCCAACCTCATGTGCCAGTACATTG 75816 Query 43009 AGTACGTCGCCGACCATCTCCT-GT-GCCAGATGGGTCTC-AGCCGCCTCTACAACACGC 43065 ||| |||||||||| ||| || || ||| | || | || | | |||||| || Sbjct 75817 AGTTTGTCGCCGACCGTCTGCTCGTCGCC--CTCGGCAACGAGAAG-ATGTACAACTCGA 75873 Query 43066 CGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGA 43125 | |||||||||||| ||||||| |||||| || |||||||| |||||||||||||| Sbjct 75874 CCAACCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGGCCAACTTTTTCGAGT 75933 Query 43126 AGCGCGTC 43133 ||| ||| Sbjct 75934 CGCGTGTC 75941 >seq1 Length=5305799 Score = 123 bits (136), Expect = 5e-23 Identities = 244/353 (69%), Gaps = 10/353 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 || |||||| |||||||| ||||||||||| || | ||| | || | || || || Sbjct 776488 CCGTGCATCCGCAAGAAGGCCGACTGGGCGCTGAAATACATC-ACAGACGAGATGC--CG 776432 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 ||| || | || | || ||| | ||| || ||||||||||| ||||| | || Sbjct 776431 TTCCGCACACGTCTCATTGCGTTTGCGTGCGTTGAAGGCATCTTCTTTTCGGGATCGTTT 776372 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 ||| ||||||||||||||||| || | | ||||| ||||||||||||||| ||||| Sbjct 776371 GCCGCCATCTTCTGGCTCAAGAAGCGTGGTTTGATGCGCGGACTCACCTTCTCAAACGAG 776312 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 ||||| | | ||||| || | || | ||||||||| || | |||| | |||| Sbjct 776311 CTCATATCCCGCGACGAAGGCATACACACGGACTTTGCGTGTTTGCTGTAC---GGCCAT 776255 Query 42873 CTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACG-GAGGCCGTGGAGAT 42931 |||| |||| | | ||| ||| | || | ||| || || || || || Sbjct 776254 CTCAAGCACCGGTGCGATCCGGATGAGGTTTACACAATTGT-ACGCGAAGCGGTCGACAT 776196 Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAAC 42983 ||||||||||||||||| | |||| ||||||| | || | || |||||| Sbjct 776195 TGAGAAGGAGTTCCTCACAGACGCGCT-CCCGTGTGCTCTCATTGGAATGAAC 776144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338893089760