Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3 282 5e-71 seq6 125 9e-24 >seq3 Length=3131490 Score = 282 bits (312), Expect = 5e-71 Identities = 1122/1748 (64%), Gaps = 51/1748 (3%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 ||||||||||| || || |||||||| || |||||||| | || | |||||||||| Sbjct 1593641 CGGAGGTAGTAGATACCAGTCTTGAGTCCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTG 1593582 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | || ||||| | || | | | | || ||| | || || |||||||||||| Sbjct 1593581 AGCTGGGAGAACGAGGGGTTGGCGAGGTGGATGTTGAGCGACTGCGACTGATCGATGAAG 1593522 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 113776 |||||| || || || | ||||| || ||||| || ||||| || || || Sbjct 1593521 GCTCCACGGTCGGCAGCAAGGTCAATGACGGCCTTCTGTGAAATCTCCCAGACGGTCTTG 1593462 Query 113777 TAGAGGTTCTTAATATCATCTGGGATATCCACGA-TATTTTGGATGGAGCCACCCG---C 113832 |||| | ||| || || || ||||| ||| || | | ||||| |||||||||| | Sbjct 1593461 TAGATGGACTTGATGTCGTCGGGGAT-TCCGGGAATGTGCTGGATCGAGCCACCCGAGGC 1593403 Query 113833 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 113892 |||| ||| | |||||| || | ||||||||||| || |||| || | Sbjct 1593402 AATGAC---GAGCTGCTTCATCTCGTCGTCCCAGAGACCAAGGTTAATGAGGTCACGGAG 1593346 Query 113893 GAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 113950 ||| | | | ||| || || ||||||| |||| || | | |||| | Sbjct 1593345 GAGCCAGGGGCA--GACGACCTGGAAGTCACCCGAGAGGACACGACGCGAGTAGAGCATC 1593288 Query 113951 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGC 114010 | ||||| ||||| |||||||| || || | ||| || | ||| ||||| |||||| Sbjct 1593287 GAAGTGTAGGGCTCGAAGCACTCGTTCCAGCCAAGGATCTGCGAGGTCGAGGCAGTGGGC 1593228 Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070 ||||| || | ||| || ||| |||| ||| | | ||| || || || Sbjct 1593227 ATGGGGGCAACGAGGAGCGAGTTGCGGACACCGTGCTGGGAAATCTTCTCACGAAGCTCG 1593168 Query 114071 TCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 114128 ||||||| | || | | | | | || ||| | || |||||||| | || | Sbjct 1593167 TCCCAGTTCCAGAGGTCGGTGGGGACACGGCC--CCAGAGGTCGAACTGGAGCTTGCCCT 1593110 Query 114129 GGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGC 114188 || ||||| ||||| | | ||| |||| | | |||| ||| | Sbjct 1593109 CAGAAATGGGCGAGCCCTCGTACGAAGGGTACTTGCCCATCTCGACGGCCATCTCGCACG 1593050 Query 114189 TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCC 114247 || |||||| || ||||| || || ||||| || || | || | || | | | Sbjct 1593049 ACGACTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGGCGAG-CA 1592991 Query 114248 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 114307 ||| || || || | | ||| || || | || || ||||| ||||||||| Sbjct 1592990 TCGGGCGAGTCGAAGGGCATGCGGAGGGCCATGAAGGCGTCGGCAAGACCCTGGACACCG 1592931 Query 114308 AGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAA 114364 || || | ||||| || | ||| || || || | || ||| ||||| || | Sbjct 1592930 AGACCGACGGGGCGGTGGCGCATGTTCGAGTTCCTGGC---CTCGGGAACGGGGTAGTAG 1592874 Query 114365 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 114424 || | ||| || | || || ||||| |||||||| ||||| || |||||||| Sbjct 1592873 TTGCGCGAGATGACAGCGTCGAGGTTCTTGGTAACAACCTTGGTGATCTCGTGAAGCTTC 1592814 Query 114425 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 114484 | | | || | ||| |||| | |||| | ||| ||||| | || || || Sbjct 1592813 TTGAAGTCGTAGGTGCCGTTCTCAAAGTCGACAAAGGCAGGGAGGGCAAGGGAGGCAAGG 1592754 Query 114485 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 114544 || || || | | ||| || | | |||||| || || || || || | || || Sbjct 1592753 TTGCAGACGGCGACCTCGTCGGGGGCCGAGTACTCGATGATCTCAGTGCAGAGGTTGGAC 1592694 Query 114545 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 114604 ||| |||||||| | || || || |||||||| ||| || |||||||| ||| Sbjct 1592693 GACTTGATGGTGCCGAGGTGCTGCTGGTTTGACTTGCGGTTGGCAGCGTCCTTGTAGAGC 1592634 Query 114605 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGC 114663 ||| | || || ||||| || |||| || ||| || || ||| | | || | | | Sbjct 1592633 ATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATGGCGAACCAAAGCTTCTGAGCC 1592574 Query 114664 TGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGAGGGCTTC 114717 | | ||| ||| || |||| |||| ||||||||| ||||||||| || Sbjct 1592573 TTGA----TGGTCTTG---CGACCCTTGCCCTCACGCTCGTACTTCTCGTAGAGGGCCTC 1592521 Query 114718 AAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCA 114777 |||||| || | | || || || || || || | ||||| | ||| | ||| Sbjct 1592520 AAACTCCTCCGAGTGGACGTCGGAAAGGCCGGGGCACTCGGCGGGGCACATGAGGGTCCA 1592461 Query 114778 TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAG 114837 | ||| | |||| ||||| |||||||||||| | ||||||||| || ||||||| Sbjct 1592460 GTCACCGTCGGCCTCGACACGGCGCATGAAGAGGTCGGAGATCCAGAGGGCGTAGAAGAG 1592401 Query 114838 ATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGAT 114897 || || ||| | || || | || || || || | || | ||||| | || Sbjct 1592400 GTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAAGTCGAAGAC 1592341 Query 114898 ATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------CCAGC 114951 || |||||||| || || ||||| | || | | || | | || ||| | Sbjct 1592340 GTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACC---AGGGCGCTTGTTGCCACC 1592284 Query 114952 CTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGA 115011 ||||| ||||| | || ||||| | | |||| ||||| |||| ||||| | || Sbjct 1592283 CTGGTCGACATAACGGGCAGTGGCGTCGTAGGCGCGGAGCATGGGAACAATACCGTTCGA 1592224 Query 115012 TTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCATGGATGTGCATA 115069 | ||| || || || ||| ||||| | | | || | | | || ||||| | | Sbjct 1592223 ATAGCCGTTGGTGCCAGCAATGTACGAGCCCT--TAGCACGAATGTTGTGAATGTGGAGA 1592166 Query 115070 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCG 115129 |||||||| || || ||| ||||| || ||||| | |||| || ||||||| ||| Sbjct 1592165 CCAATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATGCCG 1592106 Query 115130 TCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 115189 || ||||||||| |||| | |||| ||||||||| |||||| || || || ||| Sbjct 1592105 TCAATCGAGTCATCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTGGGGGGTA 1592046 Query 115190 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAG 115249 || |||||||||||||| || | |||||| |||| || | ||||| | |||| Sbjct 1592045 CCGGCGTTGAAGAGGGTAGGGGAGGCGTGGGTGAAGTAACGCTCCGACATGAGGTTGTAG 1591986 Query 115250 GTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATG 115309 ||||| | ||| | ||||| || ||||| ||||| |||||||| ||||| | |||| Sbjct 1591985 GTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCAATCGAGACACGCATGATCATG 1591926 Query 115310 TATTGGGG 115317 | ||||| Sbjct 1591925 TGCTGGGG 1591918 >seq6 Length=2644601 Score = 125 bits (138), Expect = 9e-24 Identities = 176/246 (72%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||||||||||||||| || |||||||| || |||||||| ||||| Sbjct 75662 GGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAGTCC 75603 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||||| || |||||||| | |||||| || | || || |||||||||||||| Sbjct 75602 GGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAAGAT 75543 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC--- 126222 ||||| || || || |||| ||||||||| || || || ||||| | ||| Sbjct 75542 GCCCTCGACGGCAGCAAAGGCAATGAGACGCTCGGCGAACGA---CGACTGTTCGTCGGT 75486 Query 126223 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 126282 | ||| | |||||| | ||||| |||| || || || | |||| ||| || | Sbjct 75485 GATCCAGCGGAGCGCCCAGTCGGCCTTCTTCTTAATGCAGGGAATAGTCTCGATGGCCTT 75426 Query 126283 AAAGAG 126288 ||||| Sbjct 75425 GAAGAG 75420 Score = 120 bits (132), Expect = 4e-22 Identities = 273/409 (67%), Gaps = 5/409 (1%) Strand=Plus/Plus Query 10786 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 10845 ||| || || || || || || | || ||| ||| |||| ||| ||||| || | Sbjct 1387322 ACGGTCGAAACGGCCGGGACGCATAAGAGCGGGGTCGAGGACATCGGGACGGTTGGTACC 1387381 Query 10846 CGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATT 10905 |||| ||||||||| | || | | ||||| ||||||||| | || || || Sbjct 1387382 GGCGAGAACAACGATGTGCTCCTTGCTGCTGAAGCCGTCCATCTCAACGAGAAGCTGGTT 1387441 Query 10906 GATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCACTG----CGTTGCTTAC 10961 || ||| || || || || || || || || |||| || || ||| | Sbjct 1387442 GAGGGTCGACTCCCGCTCGTCGTTTCCGC-CAAACTGTCCGCCCTTGCCACGGGCCTTTC 1387500 Query 10962 CGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAA 11021 ||| ||||||||| || |||| ||| | ||| || || || | | |||| | | Sbjct 1387501 CGATGGCGTCAATCTCGTCGACGAAGATGATGCAGGGGGCGTTCTTCCTGGCAGTGGCGA 1387560 Query 11022 AGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGG 11081 ||| || ||||| | | || ||||||||| || ||||| || || || | || ||| Sbjct 1387561 AGAGGTCACGGACACGCGAGGGACCGACACCGACGAACATCTCAACGAACTCGGAACCGG 1387620 Query 11082 AACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 11141 || | ||||||||| |||| || || ||| |||| ||||||||||||||| | Sbjct 1387621 AAACCGAAAGGAAGGGGACCTTGGCCTCGCCGGCGGTGGCCTTGGCGAGGAGGGTCTTAC 1387680 Query 11142 CCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 |||| || || || | ||||| ||||||||| |||||| ||||||| Sbjct 1387681 CCGTACCGGGGGGACCAGAGAGAATGGCACCACGGGGGATCTTGGCACC 1387729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353405860080