Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 4e-14 seq5 82.4 8e-11 >seq6 Length=2644601 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||||||||| || | | ||||| | || || |||||||| ||| Sbjct 27585 GTAGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCG 27526 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || ||||||||||| || || || || || || || || || || ||| Sbjct 27525 GCAAAGATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 27466 Query 64367 ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAAG 64424 || || | || | ||| || || || || | || | |||||||||||||| || Sbjct 27465 ACGTTGTCAATGGTGT--CCGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAGAG 27408 Query 64425 TTTTTACGAAAATTTGCAT 64443 | || |||||||| ||||| Sbjct 27407 TCTTGACGAAAATCTGCAT 27389 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || ||| || |||| || |||||||||||| Sbjct 27357 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 27298 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || |||| || |||||||||||||| ||||| || || || || || || || Sbjct 27297 GCGAAAATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTT 27245 >seq5 Length=2819049 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | |||||| |||| || |||||||||||| Sbjct 1774688 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 1774629 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || | ||||| ||||||||||| || || || || || || || || || || Sbjct 1774628 GCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 1774576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644637615440