Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3 280 1e-70 >seq3 Length=3131490 Score = 280 bits (310), Expect = 1e-70 Identities = 1102/1717 (64%), Gaps = 56/1717 (3%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | ||||| | ||||| || || ||| |||||||||||| || || |||| | Sbjct 1591846 TACAACTACTTCGGTTTCAAGACCCTCGAGCGCTCGTACCTCCTCCGCATCGACGGCAAG 1591905 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||| || || || || | ||||| ||| | || || || |||||| || || Sbjct 1591906 GTCGCCGAGCGTCCCCAGCACATGATCATGCGTGTCTCGATTGGTATCCACGGCGACAAC 1591965 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTAT---ACCATGGCC 93894 || || || | | | | || |||| ||| | | || ||| ||| Sbjct 1591966 ATTGACAAGGTCATTGAGACCTACAACCTCATGTCGGA---GCGTTACTTCACCCACGCC 1592022 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 |||| ||||| |||||||| || ||||| || |||||||| ||||| ||||| | Sbjct 1592023 TCCCCTACCCTCTTCAACGCCGGTACCCCCCACCCCCAGATGTCGTCGTGCTTCCTTGTC 1592082 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 | | |||| ||||| || ||| || | ||||| ||||||| ||| || ||| Sbjct 1592083 GCCATGAAGGATGACTCGATTGACGGCATCTACGACACCCTCAAGACCTGCGCCCAGATC 1592142 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTAC 94074 || || || || || || || || | ||| || | ||||| | ||| || ||| Sbjct 1592143 TCCAAGACTGCCGGCGGTATTGGTCTCCACATTCACAACATTCGTGCTAAGGGCTCGTAC 1592202 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 || || ||||| ||| || ||||| | || || |||||||| | || | || | Sbjct 1592203 ATTGCTGGCACCAACGGCTATTCGAACGGTATTGTTCCCATGCTCCGCGCCTACGACGCC 1592262 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 | || || || || ||||||||||| | | | ||| | || || |||| ||| Sbjct 1592263 ACTGCCCGTTATGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTC 1592322 Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 |||||||||||||| ||||| | ||| ||||||| || |||||||||||||| || Sbjct 1592323 GAGCCCTGGCACGCCGACGTCTTCGACTTCCTCGACCTTCGCAAGAACCACGGCAAGGAG 1592382 Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314 || | ||| | |||||||||||||| |||||| | | ||||| || ||| || Sbjct 1592383 GAGGTTCGTGCCCGTGACCTCTTCTACGCCCTCTGGATCTCCGACCTCTTCATGCGCCGT 1592442 Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374 |||||| || | ||||| || | || ||| || || ||||| || |||||| Sbjct 1592443 GTCGAGGCCGACGGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTTTCCGAC 1592502 Query 94375 GT-TTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 || | | | | ||||| | | | || | ||||| ||||||||| | Sbjct 1592503 GTCCACTCGGAGGAG-TTTGAGGCCCTCTACGAGAAGTACGAGCGTGAGGGCAAGGGTCG 1592561 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 ||| || | ||| |||||| ||| ||| | || | ||| ||||| || Sbjct 1592562 CAAGACCATCAAGGCTCAGAAGCTTTGGTTCGCCATCCTCGAGGCCCAGACCGAGACTGG 1592621 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 | |||| ||| | | ||||||| ||| |||| |||||| ||||||||||||||||| Sbjct 1592622 TGGCCCCTTCATGCTCTACAAGGACGCTGCCAACCGCAAGTCAAACCAGCAGCACCTCGG 1592681 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 |||||| || || || ||||| ||||| ||||||| | | || |||||| | Sbjct 1592682 CACCATCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCGGCCCCCGACGAGGT 1592741 Query 94614 TGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA----GATGCCTACA 94669 || || || ||||| | |||| | ||| | | || || ||| || | || Sbjct 1592742 CGCCGTCTGCAACCTTGCCTCCCTTGCCCTCCCTGCCTTTGT-CGACTTTGAGAACGGCA 1592800 Query 94670 CGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT--CTT 94727 | |||| |||| || ||||| | || | |||| || | | Sbjct 1592801 C--CTACGACTTC----------AAGAAGCTTCACGAGATCAC--CAAGGTTGTTACCAA 1592846 Query 94728 GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAA 94787 |||||| || || ||| |||| ||||||||| || ||||| |||||| || Sbjct 1592847 GAACCTCGACGCTGTCATCTCGCGCAACTACTACCCCGTTCCCGAGGCCAGGAACTCGAA 1592906 Query 94788 CCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGAT 94847 | || || || ||| |||| |||| ||||||||| | || ||||| | || | Sbjct 1592907 CATGCGCCACCGCCCCGTCGGTCTCGGTGTCCAGGGTCTTGCCGACGCCTTCATGGCCCT 1592966 Query 94848 GCGTCTGCCCTACGACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906 || |||||| |||||| ||| || || | | || | | || ||||| | || Sbjct 1592967 CCGCATGCCCTTCGACTCGCCCGATGCTCGCCAG-CTCAACCTCCAGATCTTCGAGACCA 1593025 Query 94907 TTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCG----GGCCA 94962 | || ||| || | | | |||| || |||| || || || || || Sbjct 1593026 TCTACCACGCTGCTCT----CGAGTCGTC----GTGCGAGAT-GGCCGTCGAGATGGGCA 1593076 Query 94963 --CACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGG 95020 || |||| | || |||||| | |||||| | |||||||||||||||| Sbjct 1593077 AGTACCCTTCGTACGAGGGCTCGCCCATTTCTGAGGGCAAGCTCCAGTTCGACCTCTGGG 1593136 Query 95021 G-TGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACAC 95079 | ||| ||| | | || | ||||||| | || || | | || | | ||| Sbjct 1593137 GCCGTG-TCCCCACCGACCTCTGGAACTGGGACGAGCTTCGTGAGAAGATTTCCCAGCAC 1593195 Query 95080 GGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTT 95139 ||||| ||| |||| || || |||||||||||||| ||||| || ||||||||||| Sbjct 1593196 GGTGTCCGCAACTCGCTCCTCGTTGCCCCCATGCCCACTGCCTCGACCTCGCAGATCCTT 1593255 Query 95140 GGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCC 95199 ||| ||||||| ||||| |||| ||| || | | ||| | || || ||| | Sbjct 1593256 GGCTGGAACGAGTGCTTCGAGCCCTACACTTCGATGCTCTACTCGCGTCGTGTCCTCTCG 1593315 Query 95200 GGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGG 95259 || || |||| ||| || | ||||| || ||||| | || ||| | ||| Sbjct 1593316 GGTGACTTCCAGGTCGTCTGCCCCTGGCTCCTCCGTGACCTCATTAACCTTGGTCTCTGG 1593375 Query 95260 GGTGACAAGGTCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCC 95315 | ||| || | ||| | | | ||| || | ||||| ||||| |||| || Sbjct 1593376 GACGACGAGATGAAGCAGCTCGTCATTGCCTCGGG----TGGCTCGATCCAGCACATTCC 1593431 Query 95316 GCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGT 95375 ||| || || ||||||||| | ||||||||||||| |||||||| | ||| | Sbjct 1593432 CGGAATCCCCGACGACATCAAGTCCATCTACAAGACCGTCTGGGAGATTTCACAGAAGGC 1593491 Query 95376 GATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATC 95412 | | |||| || |||| ||| || |||||||| Sbjct 1593492 CGTCATTGACCTTGCTGCCGACCGTGGAGCCTTCATC 1593528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723039214960