Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 123 2e-23 seq3 87.8 2e-12 >seq6 Length=2644601 Score = 123 bits (136), Expect = 2e-23 Identities = 294/440 (67%), Gaps = 7/440 (2%) Strand=Plus/Plus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 |||||||| | | ||||| || ||||||||| | || || || || || ||| Sbjct 75507 GCCGAGCGTCTCATTGCCTTTGCTGCCGTCGAGGGCATCTTCTTCTCGGGGTCGTTCGCC 75566 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 ||||||| | | || | | ||| | |||||||| || || ||| |||||| | Sbjct 75567 TCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGACTCACATTCTCGAACGAGCTC 75626 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG-ACGCGCGT 52570 || ||||||||||| || || ||||| |||||||| |||||| || || || Sbjct 75627 ATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTTGGCCACCTCCGC 75686 Query 52571 GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGA 52630 ||| | | | |||| ||| | || |||||||||| || || || Sbjct 75687 CGCCGCACCC----ACCCCGACATTATCAACAAGATTATCAAGGAGGCCGTCAAGATTGA 75742 Query 52631 AAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCAT 52690 ||||||| | || | || ||||| ||| ||| | ||||||||||| | ||| Sbjct 75743 GCAGGAGTTCCTCACCGAGGCCCTGCCTGTCTCGCTCATCGGCATGAACGCCAACCTCAT 75802 Query 52691 GTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGT 52749 |||| ||||||| |||||||| || || |||||| | || ||| |||| | | ||| Sbjct 75803 GTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTC-GGCAACGAGAAGA 75861 Query 52750 ACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCA 52809 | |||| | ||| || || || || ||| | | || ||||| |||||||| ||| Sbjct 75862 TGTACAACTCGACCAACCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGGCCA 75921 Query 52810 ACTTTTTCGAGAAGCGAGTC 52829 ||||||||||| ||| ||| Sbjct 75922 ACTTTTTCGAGTCGCGTGTC 75941 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | ||| || |||||||| || || |||| | Sbjct 27582 GACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCA 27523 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 27522 AAGATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACG 27463 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | |||||| ||||| | || | || || || |||||||| || Sbjct 27462 TTGTCAATGGTGTCCGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAGAGTCTTG 27403 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 27402 ACGAAAATCTGCAT 27389 >seq3 Length=3131490 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 57305 CGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTCGCTGC 57364 |||||||||| | ||| || |||| ||| |||| ||| |||| || ||||| | ||| Sbjct 2531553 CGACGTTGCCGAGGTCACCAGCGTGGCGCTCGGCGGCGGTGGGGGCACCGTGGTTCTTGC 2531612 Query 57365 CGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 57424 || |||||| ||||| | || ||||| ||||||||||| |||||| || | ||||| Sbjct 2531613 CGTGGGGGTTGAAGTGGCCACCGGCCGAGGTGCAGCCGTTCGAGGTGTCACCAAGCTCGT 2531672 Query 57425 G 57425 | Sbjct 2531673 G 2531673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262238714720