Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6 129 6e-25 seq4 125 7e-24 seq5 89.7 5e-13 >seq6 Length=2644601 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| ||||| || | ||||| ||| || ||||| ||||| Sbjct 27585 GTAGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCG 27526 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| || || || ||||||||||||||| ||| ||| |||| Sbjct 27525 GCAAAGATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 27466 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| | | |||||||| |||||| || | ||| | || |||||||||||||| Sbjct 27465 ACGTTGT-CAATGGTGTCCGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAGAGT 27407 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 27406 CTTGACGAAAATCTGCAT 27389 Score = 111 bits (122), Expect = 1e-19 Identities = 291/445 (65%), Gaps = 17/445 (4%) Strand=Plus/Plus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192 ||||| ||| | || || || || |||||||||| ||||||||||||| || || Sbjct 75507 GCCGAGCGTCTCATTGCCTTTGCTGCCGTCGAGGGCATCTTCTTCTCGGGGTCGTTCGCC 75566 Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252 | || || | | || | || | |||||||| ||||| || |||||||| Sbjct 75567 TCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGACTCACATTCTCGAACGAGCTC 75626 Query 47253 ATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTA----CAACACTAG 47308 |||||| | ||||| || || |||||| |||||||||| ||| || || | | Sbjct 75627 ATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTTGGCCACCTCCGC 75686 Query 47309 AGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCC---GAAGCCGTCGC 47365 | || | | ||| | | | | ||| | || | || |||||| Sbjct 75687 CGCCGCACCCAC----------CCCGACATTATCAACAAGATTATCAAGGAGGCCGTCAA 75736 Query 47366 CATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGA 47425 |||||| |||||| || ||||||| ||||| | || | | || |||||||| | Sbjct 75737 GATTGAGCAGGAGTTCCTCACCGAGGCCCTGCCTGTCTCGCTCATCGGCATGAACGCCAA 75796 Query 47426 GATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCC 47485 | ||| | ||||||| || |||||||||||||| |||||||| || | Sbjct 75797 CCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGCAACGA 75856 Query 47486 CAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAA 47545 ||||| ||| || | || || ||||| || ||| | | || ||||| ||||||| Sbjct 75857 GAAGATGTACAACTCGACCAACCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAA 75916 Query 47546 GACCAACTTTTTCGAGAAGCGCGTC 47570 | |||||||||||||| ||| ||| Sbjct 75917 GGCCAACTTTTTCGAGTCGCGTGTC 75941 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | || || || || ||||| || || Sbjct 27357 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 27298 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | |||||||| ||||| || ||||||||||||||| ||| || |||| Sbjct 27297 GCGAAAATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 27238 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 | |||| |||| |||||||| |||||| || | ||| | || ||||| || || Sbjct 27237 ACGTTG-TCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAG 27182 >seq4 Length=3045899 Score = 125 bits (138), Expect = 7e-24 Identities = 130/168 (77%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | |||||||| || || || |||||||||||| Sbjct 1996765 TCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 1996706 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| ||| ||||| ||||| ||| |||||||| | |||||| |||| ||| | Sbjct 1996705 TCCTGGATCTTCGCCTTGACGTTGT-CGATGGTGTCCGAAGACTCGACCTCGAGGGTGAT 1996647 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTTATT 127125 || |||||||| || || || || |||||||||||||| |||| || Sbjct 1996646 GGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGGCGGATTTTTT 1996599 >seq5 Length=2819049 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| || || ||||| || || Sbjct 1774688 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 1774629 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || || || ||||||||||||||| ||| || |||| Sbjct 1774628 GCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 1774569 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||||| | ||| || |||| ||| | || ||||| || || || Sbjct 1774568 ACGTTG-TCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTAAGGGT 1774510 Query 127096 TTTTAC 127101 || || Sbjct 1774509 CTTAAC 1774504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500645462240