Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 250 3e-61 seq6 125 9e-24 >seq3 Length=3131490 Score = 250 bits (276), Expect = 3e-61 Identities = 1117/1748 (64%), Gaps = 51/1748 (3%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 ||||||||||| || || |||||||| || |||||||| | || | ||||| |||| Sbjct 1593641 CGGAGGTAGTAGATACCAGTCTTGAGTCCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTG 1593582 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | || ||||| | || | | | | || ||| | || || |||||||||||| Sbjct 1593581 AGCTGGGAGAACGAGGGGTTGGCGAGGTGGATGTTGAGCGACTGCGACTGATCGATGAAG 1593522 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737 ||| || || || || | ||||| || ||||| || ||||| || || || Sbjct 1593521 GCTCCACGGTCGGCAGCAAGGTCAATGACGGCCTTCTGTGAAATCTCCCAGACGGTCTTG 1593462 Query 115738 TAGAGGTTCTTAATATCATCTGGGATATCCACGA-TATTTTGGATAGAGCCACCTG---C 115793 |||| | ||| || || || ||||| ||| || | | ||||| |||||||| | | Sbjct 1593461 TAGATGGACTTGATGTCGTCGGGGAT-TCCGGGAATGTGCTGGATCGAGCCACCCGAGGC 1593403 Query 115794 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCAC 115853 |||| ||| | |||||| || | ||||||||||| || |||| || || Sbjct 1593402 AATGAC---GAGCTGCTTCATCTCGTCGTCCCAGAGACCAAGGTTAATGAGGTC----AC 1593350 Query 115854 G-AGGTGCTTATTGACA-ACAACA---AACTCACCCGCGAGGGTGCGTCTCAGATAGATG 115908 | ||| || | | || || || || ||||||| |||| || | | |||| Sbjct 1593349 GGAGGAGCC-AGGGGCAGACGACCTGGAAGTCACCCGAGAGGACACGACGCGAGTAGAGC 1593291 Query 115909 TTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTG 115968 | | ||||| ||||| |||||||| || || | ||| || | || ||||| ||| Sbjct 1593290 ATCGAAGTGTAGGGCTCGAAGCACTCGTTCCAGCCAAGGATCTGCGAGGTCGAGGCAGTG 1593231 Query 115969 GGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGG 116028 |||||||| || | ||| || |||||||| ||| | ||| || || Sbjct 1593230 GGCATGGGGGCAACGAGGAGCGAGTTGCGGACACCGTGCTGGGAAATCTTCTCACGAAGC 1593171 Query 116029 GCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCT 116088 ||||||||| || | | | | | |||| | || |||||||| | || Sbjct 1593170 TCGTCCCAGTTCCAGAGGTCGGTGGGGACACGGCCCCAGAGGTCGAACTGGAGCTTGCCC 1593111 Query 116089 TGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAG 116148 | || ||||| ||||| | | || |||| | | |||| ||| | Sbjct 1593110 TCAGAAATGGGCGAGCCCTCGTACGAAGGGTACTTGCCCATCTCGACGGCCATCTCGCAC 1593051 Query 116149 CTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGC 116207 || |||||| || ||||| || || ||||| || || | || | || | | | Sbjct 1593050 GACGACTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGGCGAG-C 1592992 Query 116208 CTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACC 116267 ||| || || || | | ||| || || | || || ||||| |||||||| Sbjct 1592991 ATCGGGCGAGTCGAAGGGCATGCGGAGGGCCATGAAGGCGTCGGCAAGACCCTGGACACC 1592932 Query 116268 GAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAA 116324 ||| || | ||||| || | ||| || || || | || ||| ||||| || | Sbjct 1592931 GAGACCGACGGGGCGGTGGCGCATGTTCGAGTTCCTGGC---CTCGGGAACGGGGTAGTA 1592875 Query 116325 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 116384 || | ||| || | || || ||||| |||||||| ||||| || |||||||| Sbjct 1592874 GTTGCGCGAGATGACAGCGTCGAGGTTCTTGGTAACAACCTTGGTGATCTCGTGAAGCTT 1592815 Query 116385 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 116444 | | | || | ||| |||| | |||| | ||| ||||| | || || || Sbjct 1592814 CTTGAAGTCGTAGGTGCCGTTCTCAAAGTCGACAAAGGCAGGGAGGGCAAGGGAGGCAAG 1592755 Query 116445 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 116504 || || || | | ||| || | | |||||| || || || || || | || || Sbjct 1592754 GTTGCAGACGGCGACCTCGTCGGGGGCCGAGTACTCGATGATCTCAGTGCAGAGGTTGGA 1592695 Query 116505 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAG 116564 ||| |||||||| | || || || |||||||| ||| || ||||||||||| Sbjct 1592694 CGACTTGATGGTGCCGAGGTGCTGCTGGTTTGACTTGCGGTTGGCAGCGTCCTTGTAGAG 1592635 Query 116565 CATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGG 116623 ||| | || || ||||| || |||| || ||| || || ||| | | || | | Sbjct 1592634 CATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATGGCGAACCAAAGCTTCTGAGC 1592575 Query 116624 CTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGAGGGCCT 116677 || | ||| ||| || |||| |||| ||||||||| ||||||||||| Sbjct 1592574 CTTGA----TGGTCTTG---CGACCCTTGCCCTCACGCTCGTACTTCTCGTAGAGGGCCT 1592522 Query 116678 CAAACTCTTCACCCACAG--CCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGA 116735 ||||||| || | | | | || || || || || || | || || | ||| | Sbjct 1592521 CAAACTCCTC--CGAGTGGACGTCGGAAAGGCCGGGGCACTCGGCGGGGCACATGAGGGT 1592464 Query 116736 CCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAA 116795 ||| | ||| | |||| || || |||||||||||| | ||||||||| || |||| Sbjct 1592463 CCAGTCACCGTCGGCCTCGACACGGCGCATGAAGAGGTCGGAGATCCAGAGGGCGTAGAA 1592404 Query 116796 GAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 116855 ||| || || ||| | || || | || || || || | || | ||||| | Sbjct 1592403 GAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAAGTCGAA 1592344 Query 116856 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGA---CCAGC 116912 || || |||||||| || || ||||| | || | | || ||| ||| | Sbjct 1592343 GACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACC 1592284 Query 116913 CTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGA 116972 ||||| ||||| | || || |||| | |||| ||||| |||| ||||| | || Sbjct 1592283 CTGGTCGACATAACGGGCAGTGGCGTCGTAGGCGCGGAGCATGGGAACAATACCGTTCGA 1592224 Query 116973 TTGGCCATTTGTCCCCCGAAT--ACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATA 117030 | ||| || || || ||| ||||| | | | || | | | ||| ||||| | | Sbjct 1592223 ATAGCCGTTGGTGCCAGCAATGTACGAGCCCT--TAGCACGAATGTTGTGAATGTGGAGA 1592166 Query 117031 CCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCA 117090 |||||||| || || ||| ||||| || ||||| | |||| || ||||||| || Sbjct 1592165 CCAATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATGCCG 1592106 Query 117091 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 117150 || ||||||||| |||| | |||| |||||||| |||||| || || || ||| Sbjct 1592105 TCAATCGAGTCATCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTGGGGGGTA 1592046 Query 117151 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAG 117210 || |||||||||||||| || | |||||| |||| || | ||||| | |||| Sbjct 1592045 CCGGCGTTGAAGAGGGTAGGGGAGGCGTGGGTGAAGTAACGCTCCGACATGAGGTTGTAG 1591986 Query 117211 GTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATG 117270 ||||| | ||| | ||||| || ||||| ||||| || ||||| ||||| | |||| Sbjct 1591985 GTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCAATCGAGACACGCATGATCATG 1591926 Query 117271 TATTGGGG 117278 | ||||| Sbjct 1591925 TGCTGGGG 1591918 >seq6 Length=2644601 Score = 125 bits (138), Expect = 9e-24 Identities = 274/409 (67%), Gaps = 5/409 (1%) Strand=Plus/Plus Query 12701 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 12760 ||| || || || || || || | || ||| ||| |||| ||| ||||| || | Sbjct 1387322 ACGGTCGAAACGGCCGGGACGCATAAGAGCGGGGTCGAGGACATCGGGACGGTTGGTACC 1387381 Query 12761 CGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATT 12820 |||| ||||||||| | || | | |||||| ||||||||| | || || || Sbjct 1387382 GGCGAGAACAACGATGTGCTCCTTGCTGCTGAAGCCGTCCATCTCAACGAGAAGCTGGTT 1387441 Query 12821 GATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTG----CGTTGCTTAC 12876 || ||| || || || || || || || || |||| || || ||| | Sbjct 1387442 GAGGGTCGACTCCCGCTCGTCGTTTCCGC-CAAACTGTCCGCCCTTGCCACGGGCCTTTC 1387500 Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAA 12936 ||| ||||||||| ||||| | ||| | ||| || || || | | |||| | | Sbjct 1387501 CGATGGCGTCAATCTCGTCGACGAAGATGATGCAGGGGGCGTTCTTCCTGGCAGTGGCGA 1387560 Query 12937 AGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGG 12996 ||| || || || | | || ||||||||| || |||||||| || || | || ||| Sbjct 1387561 AGAGGTCACGGACACGCGAGGGACCGACACCGACGAACATCTCAACGAACTCGGAACCGG 1387620 Query 12997 AACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 13056 || | ||||||||| |||| || || ||| |||| ||||||||||||||| | Sbjct 1387621 AAACCGAAAGGAAGGGGACCTTGGCCTCGCCGGCGGTGGCCTTGGCGAGGAGGGTCTTAC 1387680 Query 13057 CCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 |||| || || || | ||||| ||||||||| |||||| ||||||| Sbjct 1387681 CCGTACCGGGGGGACCAGAGAGAATGGCACCACGGGGGATCTTGGCACC 1387729 Score = 111 bits (122), Expect = 2e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||||||||||||||| || |||||||| || |||||||| || || Sbjct 75661 GCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAGTCCG 75602 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | |||||| || | || || || ||||||||||| Sbjct 75601 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAAGATG 75542 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 ||||| || || || |||| ||||||||||| || || Sbjct 75541 CCCTCGACGGCAGCAAAGGCAATGAGACGCTCGGCGAACGA 75501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507000610160