Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01]
26 sequences; 30,616,633 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq3 250 3e-61
seq6 125 9e-24
>seq3
Length=3131490
Score = 250 bits (276), Expect = 3e-61
Identities = 1117/1748 (64%), Gaps = 51/1748 (3%)
Strand=Plus/Minus
Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617
||||||||||| || || |||||||| || |||||||| | || | ||||| ||||
Sbjct 1593641 CGGAGGTAGTAGATACCAGTCTTGAGTCCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTG 1593582
Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677
| || ||||| | || | | | | || ||| | || || ||||||||||||
Sbjct 1593581 AGCTGGGAGAACGAGGGGTTGGCGAGGTGGATGTTGAGCGACTGCGACTGATCGATGAAG 1593522
Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737
||| || || || || | ||||| || ||||| || ||||| || || ||
Sbjct 1593521 GCTCCACGGTCGGCAGCAAGGTCAATGACGGCCTTCTGTGAAATCTCCCAGACGGTCTTG 1593462
Query 115738 TAGAGGTTCTTAATATCATCTGGGATATCCACGA-TATTTTGGATAGAGCCACCTG---C 115793
|||| | ||| || || || ||||| ||| || | | ||||| |||||||| | |
Sbjct 1593461 TAGATGGACTTGATGTCGTCGGGGAT-TCCGGGAATGTGCTGGATCGAGCCACCCGAGGC 1593403
Query 115794 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCAC 115853
|||| ||| | |||||| || | ||||||||||| || |||| || ||
Sbjct 1593402 AATGAC---GAGCTGCTTCATCTCGTCGTCCCAGAGACCAAGGTTAATGAGGTC----AC 1593350
Query 115854 G-AGGTGCTTATTGACA-ACAACA---AACTCACCCGCGAGGGTGCGTCTCAGATAGATG 115908
| ||| || | | || || || || ||||||| |||| || | | ||||
Sbjct 1593349 GGAGGAGCC-AGGGGCAGACGACCTGGAAGTCACCCGAGAGGACACGACGCGAGTAGAGC 1593291
Query 115909 TTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTG 115968
| | ||||| ||||| |||||||| || || | ||| || | || ||||| |||
Sbjct 1593290 ATCGAAGTGTAGGGCTCGAAGCACTCGTTCCAGCCAAGGATCTGCGAGGTCGAGGCAGTG 1593231
Query 115969 GGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGG 116028
|||||||| || | ||| || |||||||| ||| | ||| || ||
Sbjct 1593230 GGCATGGGGGCAACGAGGAGCGAGTTGCGGACACCGTGCTGGGAAATCTTCTCACGAAGC 1593171
Query 116029 GCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCT 116088
||||||||| || | | | | | |||| | || |||||||| | ||
Sbjct 1593170 TCGTCCCAGTTCCAGAGGTCGGTGGGGACACGGCCCCAGAGGTCGAACTGGAGCTTGCCC 1593111
Query 116089 TGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAG 116148
| || ||||| ||||| | | || |||| | | |||| ||| |
Sbjct 1593110 TCAGAAATGGGCGAGCCCTCGTACGAAGGGTACTTGCCCATCTCGACGGCCATCTCGCAC 1593051
Query 116149 CTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGC 116207
|| |||||| || ||||| || || ||||| || || | || | || | | |
Sbjct 1593050 GACGACTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGGCGAG-C 1592992
Query 116208 CTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACC 116267
||| || || || | | ||| || || | || || ||||| ||||||||
Sbjct 1592991 ATCGGGCGAGTCGAAGGGCATGCGGAGGGCCATGAAGGCGTCGGCAAGACCCTGGACACC 1592932
Query 116268 GAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAA 116324
||| || | ||||| || | ||| || || || | || ||| ||||| || |
Sbjct 1592931 GAGACCGACGGGGCGGTGGCGCATGTTCGAGTTCCTGGC---CTCGGGAACGGGGTAGTA 1592875
Query 116325 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 116384
|| | ||| || | || || ||||| |||||||| ||||| || ||||||||
Sbjct 1592874 GTTGCGCGAGATGACAGCGTCGAGGTTCTTGGTAACAACCTTGGTGATCTCGTGAAGCTT 1592815
Query 116385 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 116444
| | | || | ||| |||| | |||| | ||| ||||| | || || ||
Sbjct 1592814 CTTGAAGTCGTAGGTGCCGTTCTCAAAGTCGACAAAGGCAGGGAGGGCAAGGGAGGCAAG 1592755
Query 116445 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 116504
|| || || | | ||| || | | |||||| || || || || || | || ||
Sbjct 1592754 GTTGCAGACGGCGACCTCGTCGGGGGCCGAGTACTCGATGATCTCAGTGCAGAGGTTGGA 1592695
Query 116505 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAG 116564
||| |||||||| | || || || |||||||| ||| || |||||||||||
Sbjct 1592694 CGACTTGATGGTGCCGAGGTGCTGCTGGTTTGACTTGCGGTTGGCAGCGTCCTTGTAGAG 1592635
Query 116565 CATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGG 116623
||| | || || ||||| || |||| || ||| || || ||| | | || | |
Sbjct 1592634 CATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATGGCGAACCAAAGCTTCTGAGC 1592575
Query 116624 CTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGAGGGCCT 116677
|| | ||| ||| || |||| |||| ||||||||| |||||||||||
Sbjct 1592574 CTTGA----TGGTCTTG---CGACCCTTGCCCTCACGCTCGTACTTCTCGTAGAGGGCCT 1592522
Query 116678 CAAACTCTTCACCCACAG--CCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGA 116735
||||||| || | | | | || || || || || || | || || | ||| |
Sbjct 1592521 CAAACTCCTC--CGAGTGGACGTCGGAAAGGCCGGGGCACTCGGCGGGGCACATGAGGGT 1592464
Query 116736 CCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAA 116795
||| | ||| | |||| || || |||||||||||| | ||||||||| || ||||
Sbjct 1592463 CCAGTCACCGTCGGCCTCGACACGGCGCATGAAGAGGTCGGAGATCCAGAGGGCGTAGAA 1592404
Query 116796 GAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 116855
||| || || ||| | || || | || || || || | || | ||||| |
Sbjct 1592403 GAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAAGTCGAA 1592344
Query 116856 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGA---CCAGC 116912
|| || |||||||| || || ||||| | || | | || ||| ||| |
Sbjct 1592343 GACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACC 1592284
Query 116913 CTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGA 116972
||||| ||||| | || || |||| | |||| ||||| |||| ||||| | ||
Sbjct 1592283 CTGGTCGACATAACGGGCAGTGGCGTCGTAGGCGCGGAGCATGGGAACAATACCGTTCGA 1592224
Query 116973 TTGGCCATTTGTCCCCCGAAT--ACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATA 117030
| ||| || || || ||| ||||| | | | || | | | ||| ||||| | |
Sbjct 1592223 ATAGCCGTTGGTGCCAGCAATGTACGAGCCCT--TAGCACGAATGTTGTGAATGTGGAGA 1592166
Query 117031 CCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCA 117090
|||||||| || || ||| ||||| || ||||| | |||| || ||||||| ||
Sbjct 1592165 CCAATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATGCCG 1592106
Query 117091 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 117150
|| ||||||||| |||| | |||| |||||||| |||||| || || || |||
Sbjct 1592105 TCAATCGAGTCATCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTGGGGGGTA 1592046
Query 117151 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAG 117210
|| |||||||||||||| || | |||||| |||| || | ||||| | ||||
Sbjct 1592045 CCGGCGTTGAAGAGGGTAGGGGAGGCGTGGGTGAAGTAACGCTCCGACATGAGGTTGTAG 1591986
Query 117211 GTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATG 117270
||||| | ||| | ||||| || ||||| ||||| || ||||| ||||| | ||||
Sbjct 1591985 GTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCAATCGAGACACGCATGATCATG 1591926
Query 117271 TATTGGGG 117278
| |||||
Sbjct 1591925 TGCTGGGG 1591918
>seq6
Length=2644601
Score = 125 bits (138), Expect = 9e-24
Identities = 274/409 (67%), Gaps = 5/409 (1%)
Strand=Plus/Plus
Query 12701 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 12760
||| || || || || || || | || ||| ||| |||| ||| ||||| || |
Sbjct 1387322 ACGGTCGAAACGGCCGGGACGCATAAGAGCGGGGTCGAGGACATCGGGACGGTTGGTACC 1387381
Query 12761 CGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATT 12820
|||| ||||||||| | || | | |||||| ||||||||| | || || ||
Sbjct 1387382 GGCGAGAACAACGATGTGCTCCTTGCTGCTGAAGCCGTCCATCTCAACGAGAAGCTGGTT 1387441
Query 12821 GATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTG----CGTTGCTTAC 12876
|| ||| || || || || || || || || |||| || || ||| |
Sbjct 1387442 GAGGGTCGACTCCCGCTCGTCGTTTCCGC-CAAACTGTCCGCCCTTGCCACGGGCCTTTC 1387500
Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAA 12936
||| ||||||||| ||||| | ||| | ||| || || || | | |||| | |
Sbjct 1387501 CGATGGCGTCAATCTCGTCGACGAAGATGATGCAGGGGGCGTTCTTCCTGGCAGTGGCGA 1387560
Query 12937 AGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGG 12996
||| || || || | | || ||||||||| || |||||||| || || | || |||
Sbjct 1387561 AGAGGTCACGGACACGCGAGGGACCGACACCGACGAACATCTCAACGAACTCGGAACCGG 1387620
Query 12997 AACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 13056
|| | ||||||||| |||| || || ||| |||| ||||||||||||||| |
Sbjct 1387621 AAACCGAAAGGAAGGGGACCTTGGCCTCGCCGGCGGTGGCCTTGGCGAGGAGGGTCTTAC 1387680
Query 13057 CCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105
|||| || || || | ||||| ||||||||| |||||| |||||||
Sbjct 1387681 CCGTACCGGGGGGACCAGAGAGAATGGCACCACGGGGGATCTTGGCACC 1387729
Score = 111 bits (122), Expect = 2e-19
Identities = 121/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || ||||||||||||||| || |||||||| || |||||||| || ||
Sbjct 75661 GCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAGTCCG 75602
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
|||||||| || |||||||| | |||||| || | || || || |||||||||||
Sbjct 75601 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAAGATG 75542
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680
||||| || || || |||| ||||||||||| || ||
Sbjct 75541 CCCTCGACGGCAGCAAAGGCAATGAGACGCTCGGCGAACGA 75501
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613507000610160
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