Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3 125 1e-23 seq1 98.7 2e-15 >seq3 Length=3131490 Score = 125 bits (138), Expect = 1e-23 Identities = 350/531 (66%), Gaps = 12/531 (2%) Strand=Plus/Minus Query 205168 CATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTC 205227 ||| || |||||| |||||| ||| |||| || || |||||||| | || | || | Sbjct 1592436 CATGAAGAGGTCGGAGATCCAGAGGGCGTAGAAGAGGTCACGGGCACGAACCTCCTCCTT 1592377 Query 205228 TCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACC 205286 || ||||||| | ||| || ||| || | | |||||||||||| ||||| | Sbjct 1592376 GCCGTGGTTCTTGCGAAGGTCGAGG-AAGTCGAAGACGTCGGCGTGCCAGGGCTCGAGGT 1592318 Query 205287 ACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGT 205346 | | ||| | || || || | |||||| ||||||||||| || || | | |||| Sbjct 1592317 AGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACATAACGGGCAGTGGCGT 1592258 Query 205347 TGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCG 205406 | | | || ||||| || || | |||||| | ||||| |||| ||| || Sbjct 1592257 CGTAGGCGCGGAGCATGGGAACAATACCGTTCGAATAGCCGTTGGTGCCAGCAATGTACG 1592198 Query 205407 AGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCT 205466 |||| | ||| | | |||| ||| ||||| ||||| | | ||||| ||||| Sbjct 1592197 AGCCCTTAGCACGAATGTTGTGAATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCT 1592138 Query 205467 GGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACC 205525 ||||||| ||||| || ||| ||||||||| | || || || ||| || | || Sbjct 1592137 GGGCGCAGGTCTTG-AGGGTGTCGTAGATGCCGTCAATCGAGTCATCCTTCATGGCGACA 1592079 Query 205526 AGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCG 205585 || ||||||| | || || || | ||| || |||| |||||| || ||| |||| Sbjct 1592078 AGGAAGCACGACGACATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTAGGGGAGGCG 1592019 Query 205586 TGGCTGAAGCGCTTCTCGCTCAAACA----CCTGTAGGTCTCCAGCACGCTCTCCAGATC 205641 ||| ||||| | ||||| ||| |||||||||| | || | || | | Sbjct 1592018 TGGGTGAAG----TAACGCTCCGACATGAGGTTGTAGGTCTCAATGACCTTGTCAATGTT 1591963 Query 205642 GAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTC 205692 | |||||| ||||| || | || | ||||| | ||| || || | ||| Sbjct 1591962 GTCGCCGTGGATACCAATCGAGACACGCATGATCATGTGCTGGGGACGCTC 1591912 Score = 91.5 bits (100), Expect = 2e-13 Identities = 319/493 (65%), Gaps = 10/493 (2%) Strand=Plus/Minus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 ||| || |||||||| |||||||| | | || | | | | || ||||| || || || Sbjct 1593681 GTCGACAGTGAACTGGATGGCGTTGGCCGAGGGGCGGGTGCGGAGGTAGTAGATACCAGT 1593622 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTC 203961 ||| || || || ||| ||||| | |||||| || | || | | | ||||| Sbjct 1593621 CTTGAGTCCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTGAGCTGGGAGAACGAGGGGTT 1593562 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCA 204020 ||| | ||| ||||| || ||||| || |||||||| ||| || || || || || | Sbjct 1593561 GGCGAGGTGGATGTTGAGCGACTGCGACTGATCGATGAA-GGCTCCACGGTCGGCAGCAA 1593503 Query 204021 TATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTT 204080 | || | || |||||| ||||||||||| || |||||| | | | || ||| | Sbjct 1593502 GGTCAATGACGGCCTTCTGTGAAATCTCCCAGACGGTCTTGTAGATGGACTTGATGTCGT 1593443 Query 204081 GAGGCACATCTTCC---CACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136 || | |||| | || || ||||||||| ||| || | | | || Sbjct 1593442 CGGGGA----TTCCGGGAATGTGCTGGATCGAGCCACCCGAGGCAATGACGAGCTGCTTC 1593387 Query 204137 GTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 |||| || |||| | || | | || || || || | || |||| || || | Sbjct 1593386 ATCTCGTCGTCCCAGAGACCAAGGTTAATGAGGTCACGGAGGAGCCAGGGGCAGACGACC 1593327 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 || ||||| || || || || | || | | | || | ||| | || ||||| | Sbjct 1593326 TGGAAGTCACCCGAGAGGACACGACGCGAGTAGAGCATCGAAGTGTAGGGCTCGAAGCAC 1593267 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 ||||| ||| | ||||| | ||| ||| ||||||||||| || | ||| || ||| Sbjct 1593266 TCGTTCCAGCCAAGGATCTGCGAGGTCGAGGCAGTGGGCATGGGGGCAACGAGGAGCGAG 1593207 Query 204317 TTGCGCACACCGT 204329 ||||| ||||||| Sbjct 1593206 TTGCGGACACCGT 1593194 >seq1 Length=5305799 Score = 98.7 bits (108), Expect = 2e-15 Identities = 181/261 (69%), Gaps = 11/261 (4%) Strand=Plus/Plus Query 159815 GGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATC-TGCGA 159873 |||||||| || | || |||||||||||||| |||||||||||| ||||| || | Sbjct 776166 GGGAGCGCGTCTGTGAGGAACTCCTTCTCAATGTCGACCGCTTCGCGTACAATTGTGTAA 776225 Query 159874 GACACGTTCGTACC---CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAA 159930 | | | || | | |||| ||| | ||| || || ||| | |||||||| Sbjct 776226 ACCTCATCCGGATCGCACCGG--TGCTTGAGATGG---CCGTA--CAGCAAACACGCAAA 776278 Query 159931 GTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCAT 159990 ||| ||| | || ||||| || || |||| |||||| || | | |||| || |||| Sbjct 776279 GTCCGTGTGTATGCCTTCGTCGCGGGATATGAGCTCGTTTGAGAAGGTGAGTCCGCGCAT 776338 Query 159991 GATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTC 160050 | |||||| |||||||| || ||||| ||||| | || ||| ||||| || || Sbjct 776339 CAAACCACGCTTCTTGAGCCAGAAGATGGCGGCAAACGATCCCGAAAAGAAGATGCCTTC 776398 Query 160051 CACGGCCGCAAACGCCACGAG 160071 ||| ||||||||| | ||| Sbjct 776399 AACGCACGCAAACGCAATGAG 776419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154941574560