Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq5 129 1e-24 seq6 127 5e-24 seq4 86.0 1e-11 >seq5 Length=2819049 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||||||||||| ||||||||||| |||| ||||||||| | | || Sbjct 1774712 CGAAGGCGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTG 1774653 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| |||||||||||||| ||||||||||| || || || Sbjct 1774652 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCC 1774593 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 1774592 TCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGG 1774533 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 ||||| ||||| ||||| || || || || Sbjct 1774532 GTGATGGTCTTGCCCGTAAGGGTCTTAAC 1774504 >seq6 Length=2644601 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| |||||||| || |||||||| || | ||||||||||| | ||| Sbjct 27609 CGAAGACGGAGGACGAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTG 27550 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||||||||| ||||| || ||||||||||| || || || Sbjct 27549 CGGCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGGCGCTGCTGGTCAGGGGGGATGCCC 27490 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| || | |||||| | | || || || | Sbjct 27489 TCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATGGTGTCCGACGACTCGACCTCAAGG 27430 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || || ||||| || Sbjct 27429 GTGATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTG 27392 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||| ||||| |||||||| |||| ||||||||| | | || Sbjct 27381 CGAAGGCGGAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTA 27322 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| |||||||| || |||||||||||||| || ||| || Sbjct 27321 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGGGGAATGCCC 27262 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 27261 TCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGG 27202 Query 199589 GTGATCGTCTTACCCGTGAG 199608 ||||| ||||| ||||| || Sbjct 27201 GTGATGGTCTTGCCCGTAAG 27182 >seq4 Length=3045899 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || || || |||||||| ||||||||||| |||||||||||||| || || || || Sbjct 1996768 CCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCC 1996709 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||| ||| |||| |||||| | | || || || | ||| Sbjct 1996708 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTG 1996649 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || ||||| || || || ||||| || Sbjct 1996648 ATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTG 1996614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921207271742