Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6 289 3e-73 seq5 118 1e-21 seq1 91.5 1e-13 >seq6 Length=2644601 Score = 289 bits (320), Expect = 3e-73 Identities = 566/827 (68%), Gaps = 31/827 (4%) Strand=Plus/Minus Query 132627 CTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGC 132686 ||| ||||| || | || |||| || || || | | ||| || || |||||||||| Sbjct 75932 CTCGAAAAAGTTGGCCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAAGGGGTTGGT 75873 Query 132687 TGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTC 132743 | |||||| ||| | |||||| || |||||||||| | |||||| || ||||| Sbjct 75872 CGAGTTGTACATCTTCTCGTTGCCGA---GGGCGACGAGCAGACGGTCGGCGACAAACTC 75816 Query 132744 GATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGG 132802 ||||| || ||||| | || || | | | || | || || ||||| || |||| Sbjct 75815 AATGTACTGGCACATGAGGTTGGCGTTCATG-CCGATGAGCGAGACAGGCAGGGCCTCGG 75757 Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCT---AACG-CGCGCC 132858 |||| || ||||| || ||| || || ||| || | | || | || | Sbjct 75756 TGAGGAACTCCTGCTCAATCTTGACGGCCTCCTTGATAATCTTGTTGATAATGTCGGGGT 75697 Query 132859 GCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918 | | |||| | | | || || | | ||| ||||||||| || | ||| Sbjct 75696 GGGTGCGGCGGCGG----AGGTGGCCAAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCC 75641 Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 ||||| | || ||||| ||||| ||| || | |||||||||||||| || || ||| Sbjct 75640 TCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAGTCCGGGCATGAGGCCACGCTTCTTG 75581 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 ||||| || |||| |||||| ||||| ||||||| |||||||||||| || || || Sbjct 75580 AGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAAGATGCCCTCGACGGCAGCAAAGGCA 75521 Query 133039 ACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098 | || |||||| |||||| | | || | || ||||||||| |||||||| |||||| Sbjct 75520 ATGAGACGCTCGGCGAACGACGACTGTTCGTCGGTGATCCAGCGGAGCGCCCAGTCGGCC 75461 Query 133099 TTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCT--CTTCCG 133156 || | || | ||| || || || |||||||| || || ||| | || | | | Sbjct 75460 TTCTTCTTAATGCAGGGAATAGTCTCGATGGCCTTGAA------GAGGTACTGGCGGCGG 75407 Query 133157 --AGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCC 133212 || ||| | ||||||||||||||| ||| || | |||||||| | ||||||| Sbjct 75406 GCAGTGTCGCGGATGTAGGTGTCGATGAGAAGCGAGTAGGTCTCCGAGTGGATGTTCTCC 75347 Query 133213 ATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA 133272 || ||| || |||||||| ||| | ||||| | | ||| || || ||| Sbjct 75346 ATCATGATCTGGAAGCCGTAGAAGGTCTTGGCCTCTGCAATCTGGACCTCGCCGCAGAAG 75287 Query 133273 CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGC 133332 |||||||| || || ||||||||||| ||||| |||||||||||||| || |||||| Sbjct 75286 CGCTCGACGAGGTTCTCGTTGACGATTCCGTCCGACGCGGCGAAAAAGGCAAGGACGTGC 75227 Query 133333 TTGATGAAATGGCGCTCGTTGTCGTT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGGAC 133389 | ||| || | ||||| || ||||| | | ||||||||| | ||| || Sbjct 75226 TCGATAAAGTAACGCTCATTATCGTTGAGCTTGTTGTCCCAGTCGTGAAGGTCGGGGGCA 75167 Query 133390 AGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTA 133436 |||| | ||||||| ||||||| |||||||||| ||| || ||||| Sbjct 75166 AGGTTAATCTCCTCGGCGGTCCAGAACGACGCCTGGGCCTTCTTGTA 75120 Score = 134 bits (148), Expect = 1e-26 Identities = 141/183 (77%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 || |||||||| ||||||||| | || |||||| || | |||| | | | |||| | || Sbjct 27182 CTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACG-TCAA 27240 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || |||| ||||| ||||| |||||| ||||||| ||||| || |||| ||| || Sbjct 27241 GGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTTATTTTCGCCGG 27300 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||||| || |||| || |||||| ||||||||||||||| ||||| | || || Sbjct 27301 CAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCT 27360 Query 38444 GCA 38446 ||| Sbjct 27361 GCA 27363 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || |||||| | | Sbjct 27389 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCG 27448 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 27449 GACACCATTGACAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 27507 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || || | ||||| || |||||||| Sbjct 27508 GCAGCGCCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACTACAA 27567 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||| || ||||| | || || || | || || ||| | | ||||||| Sbjct 27568 CATTCAGAAGGAGTCTACACTCCACCTCGTCCTCCGTCTTCGTGGCGGCC 27617 >seq5 Length=2819049 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA- 38314 || || || || |||||||| ||||||||| |||| || ||| | | |||| | | | Sbjct 1774504 GTTAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACCATCGAC 1774563 Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374 |||| | || | || |||| ||||| ||||| || ||| | ||||| ||||| ||||| Sbjct 1774564 AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCAT 1774622 Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||| ||||| ||||| || |||| |||||||| |||||||||||||| ||||| Sbjct 1774623 CTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGA 1774682 Query 38435 AGCGACGCTGCA 38446 |||| || || Sbjct 1774683 GTCGACCCTCCA 1774694 >seq1 Length=5305799 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||| ||| || |||||||| || | ||| ||||| | ||| ||||| ||||| || Sbjct 776263 ACAGCAAACACGCAAAGTCCGTGTGTATGCCTTCGTCGCGGGATATGAGCTCGTTTGAGA 776322 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | || | ||| |||| | || || || |||||||| || |||||||| || |||| Sbjct 776323 AGGTGAGTCCGCGCATCAAACCACGCTTCTTGAGCCAGAAGATGGCGGCAAACGATCCCG 776382 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 ||||||||| ||| || ||| ||| || || | || || || |||| ||| ||| Sbjct 776383 AAAAGAAGATGCCTTCAACGCACGCAAACGCAATGAGACGTGTGCGGAAC--GGCATCTC 776440 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 || | ||| | ||||||||| |||||||| Sbjct 776441 GTCT-GTGATGTATTTCAGCGCCCAGTCGGCCTT 776473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172637443840