Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq8 315 9e-81 >seq8 Length=2114789 Score = 315 bits (348), Expect = 9e-81 Identities = 551/798 (69%), Gaps = 3/798 (0%) Strand=Plus/Minus Query 7014 CCGTTAAG-ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 ||||| || || | ||| ||||| | || ||||| ||||| ||||| |||||||| ||| Sbjct 1895279 CCGTTGAGGATCGAGGCCTGGACGGCGGCACCGTAGGCGACAGCCTCGTCGGGGTTGATC 1895220 Query 7073 GTTTTATTCAGTTCTTTACC-GTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGAT 7131 | || | || || | || || ||||| | | | || || || ||||| Sbjct 1895219 GAGCGGTTGGGCTCACGGCCAGAGAACATG-TCCGAGACGAGCTTCTGGATCTTGGGGAT 1895161 Query 7132 TCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTC 7191 || ||||| |||||||| | ||||| || || || ||| || |||||||| ||||| Sbjct 1895160 ACGGGTCGAACCACCGACAAGGACGATCTCGTTGACCGACGACTTGTCGATCTTGGAGTC 1895101 Query 7192 TCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTC 7251 || || || ||||| || ||||| ||||| | |||| || || ||||| Sbjct 1895100 GCGGAGAACCTTCTCGACGGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCAGAGCTCCTC 1895041 Query 7252 AAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTC 7311 ||||| |||||||| || || || ||||| |||| ||||||| | | ||| || || || Sbjct 1895040 GAAACGGGCACGGGTGATCGAGGTGTAGAAGTCAATGCCGTCGAAGAGCGAGTCGATCTC 1894981 Query 7312 AATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAA 7371 || | || || || | ||| || | || ||||| || |||||||| || || || | Sbjct 1894980 GATCGAGGTCTGGGCGGCCGACGAGAGGGTGCGCTTAGCACGCTCACAGGCGGTGCGGAG 1894921 Query 7372 ACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTC 7431 |||||| |||||||| | ||| || | | || ||||| | || || || ||||| | Sbjct 1894920 ACGACGGAGGGCACGGGCGTTGCCAGTGAGGTCCTTCTTGTTCTTGCGCTTGAACTCCTG 1894861 Query 7432 AGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGC 7491 |||||| | ||| | ||||| || |||||||| | ||| || || || || Sbjct 1894860 GACGAAGTGGTTGACGAGACGGTTGTCGAAGTCCTCACCACCAAGGTGGGTGTCACCGGC 1894801 Query 7492 GGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACC 7551 ||| || ||||| || ||||| || | |||||| | | | |||||| || || || || Sbjct 1894800 GGTGGCCTTGACCTCGAAGATGCCCTCCTCAATGGTGAGGAGCGAAACGTCGAAGGTTCC 1894741 Query 7552 ACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTA 7611 ||||| ||||| || ||||| |||||| | || | || ||||| ||||||||||| Sbjct 1894740 TCCACCGAGGTCGAAGATGAGGACGTTCTTCTCACCCTCGGACTTCTTGTCGAGACCGTA 1894681 Query 7612 CGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGT 7671 || || || || || || || || ||||| ||||| || || || || ||||| || Sbjct 1894680 GGCAATGGCGGCGGCGGTGGGCTCGTTAATGATACGGAGGACGTCGAGACCGGCAATGGT 1894621 Query 7672 TGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 | || || || || || || || ||||| ||||| |||||||| || || || ||||| Sbjct 1894620 ACCGGCGTCCTTGGTGGCCTGACGCTGCGAGTCGTTGAAGTAGGCGGGAACGGTGACGAC 1894561 Query 7732 CGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 || | | ||| | ||| || || | || ||| | || ||||| ||| | || || Sbjct 1894560 GGCCTTGGAGACGGTGCCACCAAGGTAGGCCTCGGCGGTCTCCTTCATCTTGATGAGGAC 1894501 Query 7792 CATCGATGAAATCTCTTC 7809 ||| || || ||||| || Sbjct 1894500 CATGGACGAGATCTCCTC 1894483 Score = 156 bits (172), Expect = 5e-33 Identities = 176/235 (75%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 7910 TGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTT 7969 ||||||| ||| | ||||| | |||||||||||||| || || || || ||||| Sbjct 1894324 TGGACCTCGGAGTCGGCGAACTTGCGGCCGATAAGACGCTTGGCGTCGAAGACGGTGTTG 1894265 Query 7970 TTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCC 8029 | |||||||||||| |||||||| || || || ||||||||||| || | | Sbjct 1894264 TAGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCACCGATAAGACGCTCGGAGT---CG 1894208 Query 8030 GTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACG 8089 || || ||||||||||| ||||| || || || || |||||||| || || || || ||| Sbjct 1894207 GTGAAGGCGACGTACGAGGGGGTAGTGCGGTTACCCTGGTCGTTGGCGATGATCTCAACG 1894148 Query 8090 CGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGA 8144 |||||||| ||||||||| | ||||| || || || || || | || ||||||| Sbjct 1894147 CGGTCGTTCTGCCAGACGGCAACGCAGGAGTAGGTGGTACCGAGGTCGATACCGA 1894093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132593581840