Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 176 6e-39 seq6 118 1e-21 seq1 95.1 2e-14 >seq3 Length=3131490 Score = 176 bits (194), Expect = 6e-39 Identities = 418/629 (66%), Gaps = 7/629 (1%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||| |||| |||||||| || || | ||||| || Sbjct 1591918 CCCCAGCACATGATCATGCGTGTCTCGATTGGTATCCACGGCGACAACATTGACAAGGTC 1591977 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || ||||| || |||| |||||| | || ||||||||| Sbjct 1591978 ATTGAGACCTACAACCTCATGTCGGAGCGTTACTTCACCCACGCCTCCCCTACCCTCTTC 1592037 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| ||||| || ||||| ||||| || |||||| | || | ||||| || Sbjct 1592038 AACGCCGGTACCCCCCACCCCCAGATGTCGTCGTGCTTCCTTGTCGCCATGAAGGATGAC 1592097 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | ||||| |||| ||| |||| || ||||| ||||| ||| || || Sbjct 1592098 TCGATTGACGGCATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACTGCCGGC 1592157 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGT--ATTAGAGGTACAA 111909 ||||| || | ||||| || | | | || | | | ||||| ||| || || | Sbjct 1592158 GGTATTGGTCTCCACATTCACAACATTCGTGCTA--AGGGCTCGTACATTGCTGGCACCA 1592215 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || | || | |||||| |||| ||||| |||| | ||||||| || || |||| Sbjct 1592216 ACGGCTATTCGAACGGTATTGTTCCCATGCTCCGCGCCTACGACGCCACTGCCCGTTATG 1592275 Query 111970 TAAACCAAGCTGG---GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 112026 | |||| | ||| ||| || | | || |||| || ||||| ||||||| Sbjct 1592276 TCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACG 1592335 Query 112027 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCC 112086 | || || | || ||||| || | || ||||| || | ||||||| || || Sbjct 1592336 CCGACGTCTTCGACTTCCTCGACCTTCGCAAGAACCACGGCAAGGAGGAGGTTCGTGCCC 1592395 Query 112087 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 112146 | || ||||||| ||| |||||||| | || ||||||||| | || |||| | Sbjct 1592396 GTGACCTCTTCTACGCCCTCTGGATCTCCGACCTCTTCATGCGCCGTGTCGAGGCCGACG 1592455 Query 112147 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGG 112206 | | ||| | ||| | || || | | || ||||| || ||||| | | |||| Sbjct 1592456 GTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTTTCCGACGTCCACTCGGAGG 1592515 Query 112207 AGTTTGAAGCCCTCTACACAAAGTACGAG 112235 ||||||| ||||||||| ||||||||| Sbjct 1592516 AGTTTGAGGCCCTCTACGAGAAGTACGAG 1592544 >seq6 Length=2644601 Score = 118 bits (130), Expect = 1e-21 Identities = 174/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 ||||| | |||||| | || |||| || ||| | ||||| || || ||||| | Sbjct 75420 CTCTTCAAGGCCATCGAGACTATTCCCTGCATTAAGAAGAAGGCCGACTGGGCGCTCCGC 75479 Query 102150 TGGTTT---GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 102206 ||| | || | ||||| || || || ||||| ||| | || ||||| || Sbjct 75480 TGGATCACCGACGAACAGTCG---TCGTTCGCCGAGCGTCTCATTGCCTTTGCTGCCGTC 75536 Query 102207 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTC 102266 ||||| ||||||||||| || || ||| | | || | |||||||||||||| || ||| Sbjct 75537 GAGGGCATCTTCTTCTCGGGGTCGTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTC 75596 Query 102267 ATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAG 102326 ||||| || ||| ||||| |||||||| ||||| || |||||||| |||||| || Sbjct 75597 ATGCCCGGACTCACATTCTCGAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGAC 75656 Query 102327 TTTGC 102331 ||||| Sbjct 75657 TTTGC 75661 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 16055 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 16114 |||||| | ||| |||||||| || | ||||| |||||| || || | | || Sbjct 1387496 CTTTCCGATGGCGTCAATCTCGTCGACGAAGATGATGCAGGGGGCGTTCTTCCTGGCAGT 1387555 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 | ||||| || || |||||| || || ||||| || |||||||| || || | | Sbjct 1387556 GGCGAAGAGGTCACGGACACGCGAGGGACCGACACCGACGAACATCTCAACGAACTCGGA 1387615 Query 16175 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 16234 ||||| | ||||||||| || | || || || |||| |||||| || || Sbjct 1387616 ACCGGAAACCGAAAGGAAGGGGACCTTGGCCTCGCCGGCGGTGGCCTTGGCGAGGAGGGT 1387675 Query 16235 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 |||||||||||| || ||| | ||| | |||||| || || |||||||| || Sbjct 1387676 CTTACCCGTACCGGGGGGACCAGAGAGAATGGCACCACGGGGGATCTTGGCACC 1387729 >seq1 Length=5305799 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 102242 || ||| | || |||||||| ||||| || |||||||| || || || || ||| || Sbjct 776422 CGTCTCATTGCGTTTGCGTGCGTTGAAGGCATCTTCTTTTCGGGATCGTTTGCCGCCATC 776363 Query 102243 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 102302 | |||||||||||||| ||| | |||| || ||| |||||| |||||||| || || Sbjct 776362 TTCTGGCTCAAGAAGCGTGGTTTGATGCGCGGACTCACCTTCTCAAACGAGCTCATATCC 776303 Query 102303 CGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 || ||||| || | ||| || |||||| Sbjct 776302 CGCGACGAAGGCATACACACGGACTTTGCG 776273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742198258720