Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3 221 1e-52 seq6 185 1e-41 >seq3 Length=3131490 Score = 221 bits (244), Expect = 1e-52 Identities = 1142/1811 (63%), Gaps = 37/1811 (2%) Strand=Plus/Minus Query 109407 GCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGA 109466 ||| || || || ||||| || ||||| || |||||| |||| | ||||| || | Sbjct 1593642 GCGGAGGTAGTAGATACCAGTCTTGAGTCCGCGCTTCCAGCCGTAGAAGTGCATCGAGGT 1593583 Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 ||| | ||| | | || | | | | ||| | |||||| |||||||||||||| Sbjct 1593582 GAGCTGGGAGAACGAGGGGTTGGCGAGGTGGATGTTGAGCGACTGCGACTGATCGATGAA 1593523 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTT 109586 ||||| || || || | ||| |||| ||| || ||| |||||||| ||||| Sbjct 1593522 GGCTCCACGGTCGGCAGCAAGGTCAATGACGGCCTTCTGTGAAATCTCCCAGACGGTCTT 1593463 Query 109587 GTACAAATTCTTGATATCATCGGGAATGTCCACGA-TGTTTTGAATAGAGCCACCAGCCT 109645 ||| | |||||| || ||||| || ||| || ||| || || |||||||| | Sbjct 1593462 GTAGATGGACTTGATGTCGTCGGGGAT-TCCGGGAATGTGCTGGATCGAGCCACCCGAGG 1593404 Query 109646 TCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAA 109705 | | ||| | ||||||||| | ||||||||| | || |||| |||| | Sbjct 1593403 CAATGACGAGCTGCTTCATCTCGTCGTCCCAGAGACCAAGGTTAATGAG---GTCACGGA 1593347 Query 109706 GATGCTTGTTGACCACGACA---AATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762 | || | | ||||| || ||||| | || || || ||||| | | Sbjct 1593346 GGAGCCAGGGGCAGACGACCTGGAAGTCACCCGAGAGGACACGACGCGAGTAGAGCATCG 1593287 Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCA 109822 |||||||| ||||| ||||| || ||| ||||| || | || || || ||||||| Sbjct 1593286 AAGTGTAGGGCTCGAAGCACTCGTTCCAGCCAAGGATCTGCGAGGTCGAGGCAGTGGGCA 1593227 Query 109823 TGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGT 109882 |||| || | ||| || ||| |||| ||| | | | | |||||| | ||| Sbjct 1593226 TGGGGGCAACGAGGAGCGAGTTGCGGACACCGTGCTGGGAAATCTTCTCACGAAGCTCGT 1593167 Query 109883 CCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACAC 109942 |||| | | | | | | ||| |||| | || || || | Sbjct 1593166 CCCAGTTCCAGAGGTCGGTG------GGGACACGGCCCCAGAGGTCGAACTGGAGCTTGC 1593113 Query 109943 CCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGG 110002 |||||| | || || |||| | | |||| ||| | |||||| |||| Sbjct 1593112 CCTCAGAAATGGGCGAGCCCTCGTACGAAGGGTACTTGCCCATCTCGACGGCCATCTCGC 1593053 Query 110003 ATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAG 110062 | || | ||| || || || || || || ||||| || || || || | |||||| Sbjct 1593052 ACGACGACTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGGCGAG 1592993 Query 110063 ACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACAC 110122 || |||||||||| | | || || | || || |||||||| |||| Sbjct 1592992 CATCGGGCGAGTCGAAGGGCATGCGGAGGGCCATGAAGGCGTCGGCAAGACCCTGGACAC 1592933 Query 110123 CGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGT 110182 ||||||| | |||||| || |||||| ||| | || |||||||| ||| Sbjct 1592932 CGAGACCGACGGGGCGGTGGCGCATGTTCGAGTTCCTGGCCTCGGGAACGGGGTAGTAGT 1592873 Query 110183 TGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGT 110242 |||| |||||| | ||| ||||| || ||| ||| ||||| || || || || | Sbjct 1592872 TGCGCGAGATGACAGCGTCGAGGTTCTTGGTAACAACCTTGGTGATCTCGTGAAGCTTCT 1592813 Query 110243 CGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGAT 110302 | | ||| | || |||| | |||| | ||||| |||| || ||||| | Sbjct 1592812 TGAAGTCGTAGGTGCCGTTCTCAAAGTCGACAAAGGCAGGGAGGGCAAGGGAGGCAAGGT 1592753 Query 110303 TGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAAC 110362 |||| || | |||||| | | | ||| || | || || || || | |||||| Sbjct 1592752 TGCAGACGGCGACCTCGTCGGGGGCCGAGTACTCGATGATCTCAGTGCAGAGGTTGGACG 1592693 Query 110363 TCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCA 110422 ||| ||| || | || || ||| || || ||| |||| || ||||| ||||||| Sbjct 1592692 ACTTGATGGTGCCGAGGTGCTGCTGGTTTGACTTGCGGTTGGCAGCGTCCTTGTAGAGCA 1592633 Query 110423 TGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCG 110481 || | ||| |||||| || ||||| | || ||| ||||| ||| | | || | | | Sbjct 1592632 TGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATGGCGAACCAAAGCTTCTGAGCC- 1592574 Query 110482 GGGACAGTTGCGTTAGCGAGACCTT--CCTC---CTCGTACTTGGTGTACAAGTCCTCAA 110536 | || | |||| |||| |||| ||||||||| ||| | | |||||| Sbjct 1592573 ----TTGATGGTCTTGCGA-CCCTTGCCCTCACGCTCGTACTTCTCGTAGAGGGCCTCAA 1592519 Query 110537 ATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAAT 110596 | |||| || || || ||||| || || | |||| || | ||||| ||| | Sbjct 1592518 ACTCCTCCGAGTGGACGTCGGAAAGGCCGGGGCACTCGGCGGGGCACATGAGGGTCCAGT 1592459 Query 110597 TTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGT 110656 || | |||| || | |||||| ||||| | ||||| | || |||| |||| Sbjct 1592458 CACCGTCGGCCTCGACACGGCGCATGAAGAGGTCGGAGATCCAGAGGGCGTAGAAGAGGT 1592399 Query 110657 CACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATAT 110716 ||||| |||| |||| || | || ||||| ||| || || | ||||| | || | Sbjct 1592398 CACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAAGTCGAAGACGT 1592339 Query 110717 CCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG------ACCCGCCT 110770 | | |||||| || ||||| |||| || | || || | | || || ||| Sbjct 1592338 CGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACC---AGGGCGCTTGTTGCCACCCT 1592282 Query 110771 GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATT 110830 ||| ||||| || || ||||| | | || | | |||||| |||| ||| || | || | Sbjct 1592281 GGTCGACATAACGGGCAGTGGCGTCGTAGGCGCGGAGCATGGGAACAATACCGTTCGAAT 1592222 Query 110831 GACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAA 110890 || || || || ||| || || |||||||||| ||| || || | ||||| Sbjct 1592221 AGCCGTTGGTGCCAGCAATGTACGAGCCCTTAGCACGAATGTTGTGAATGTGGAGACCAA 1592162 Query 110891 TACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAATACCATCA 110949 |||| || || ||| || || || || ||| |||| || | || || || ||| Sbjct 1592161 TACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCT-TGAGGGTGTCGTAGATGCCGTCA 1592103 Query 110950 ATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCC 111009 ||||| || |||| |||| | || ||||| || |||||||| || | || || || Sbjct 1592102 ATCGAGTCATCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTGGGGGGTACCG 1592043 Query 111010 GCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTG 111069 || |||||||| ||||| | || || |||| || | ||||| |||||| || Sbjct 1592042 GCGTTGAAGAGGGTAGGGGAGGCGTGGGTGAAGTAACGCTCCGACATGAGGTTGTAGGTC 1591983 Query 111070 TCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATAT 111129 || | | | | | | ||||| |||||||| | || ||||||| ||| | Sbjct 1591982 TCAATGACCTTGTCAATGTTGTCGCCGTGGATACCAATCGAGACACGCATGATCATGTGC 1591923 Query 111130 TGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTG 111189 || || ||| | ||| || || | || | ||||| ||| ||||||||| Sbjct 1591922 TGGGGACGCTCGGCGACCTTGCCGTCGATGCGGAGGAGGTACGAGCGCTCGAGGGTCTTG 1591863 Query 111190 AGACCAAAGTA 111200 | ||| ||||| Sbjct 1591862 AAACCGAAGTA 1591852 >seq6 Length=2644601 Score = 185 bits (204), Expect = 1e-41 Identities = 342/495 (69%), Gaps = 15/495 (3%) Strand=Plus/Plus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||| | ||| |||||||| || || || | ||||| || || | |||| |||||| Sbjct 1387316 AATGTGACGGTCGAAACGGCCGGGACGCATAAGAGCGGGGTCGAGGACATCGGGACGGTT 1387375 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAG 11615 ||| |||| | || || ||| || || ||| |||||||| || |||||| Sbjct 1387376 GGTACCGGCGAGAACAACGATGTGCTCCTTGCTGCTGAAGCCGTCCATCTCAACGAGAAG 1387435 Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATAC------CACCTGCCGAACG 11669 |||||||| ||| || ||||| ||||| | || || | | |||| ||| Sbjct 1387436 CTGGTTGAGGGTCGACTCCCGCTCGTCGTTTCCGC-CAAACTGTCCGCCCTTGCC--ACG 1387492 Query 11670 CTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGC 11729 ||| |||| ||||||||||| |||| ||| | ||| || || ||| | || Sbjct 1387493 GGCCTTTCCGATGGCGTCAATCTCGTCGACGAAGATGATGCAGGGGGCGTTCTTCC-TGG 1387551 Query 11730 CTGTT-CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 | || |||| || ||||| |||||| | || ||||| ||||||||||||||||| | Sbjct 1387552 CAGTGGCGAAGAGGTCACGGACACGCGAGGGACCGACACCGACGAACATCTCAACGAACT 1387611 Query 11789 TTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 | | ||| | || |||||| || || | ||| || ||| |||| ||||||| Sbjct 1387612 CGGAACCGGAAACCGAAAGGAAGGGGACCTTGGCCTCGCCGGCGGTGGCCTTGGCGAGGA 1387671 Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC-- 11906 | |||||||||||||| || | ||||| ||||| ||| |||||||||||||||||||| Sbjct 1387672 GGGTCTTACCCGTACCGGGGGGACCAGAGAGAATGGCACCACGGGGGATCTTGGCACCGA 1387731 Query 11907 ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTT 11966 |||| ||| | |||| ||||||||| | |||| |||| || |||||||| Sbjct 1387732 GCTTC--TCGTACTTTGCGGGCTCCTTGAGGAACTTGACAAACTCCATAATCTCCTCCTT 1387789 Query 11967 GGCGGAGTCGATACC 11981 ||| ||| ||||| Sbjct 1387790 GGCCTCGTCCATACC 1387804 Score = 84.2 bits (92), Expect = 3e-11 Identities = 167/244 (68%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || || ||||||||||| || ||| ||||| Sbjct 75662 GGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAGTCC 75603 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||| ||||||| || || || |||||||| Sbjct 75602 GGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAAGAT 75543 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT-GTC---GA 119670 |||||| || || || || | |||||||| || || | ||| || ||| || Sbjct 75542 GCCCTCGACGGCAGCAAAGGCAATGAGACGCTCGGC-GAACGACGACTGTTCGTCGGTGA 75484 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGA 119730 ||| ||| ||||||| |||||| || |||||||| | ||| | |||||| | || Sbjct 75483 TCCAGCGGAGCGCCCAGTCGGCCTTCTTCTTAATGCAGGGAATAGTCTCGATGGCCTTGA 75424 Query 119731 AAAG 119734 | || Sbjct 75423 AGAG 75420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975808582800