Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3 197 2e-45 seq6 116 4e-21 >seq3 Length=3131490 Score = 197 bits (218), Expect = 2e-45 Identities = 678/1046 (65%), Gaps = 27/1046 (3%) Strand=Plus/Minus Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339 || || ||||| || ||||| | ||| | || | ||| ||||| || || || | || Sbjct 1592951 TCGGCAAGACCCTGGACACCGAGACCGACGGGGCGGTGGCGCATGTTCGAGTTCCTGGC- 1592893 Query 106340 GTCTC---AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 106396 ||| |||||| || | || | ||||| || || || |||||||||| | Sbjct 1592892 --CTCGGGAACGGGGTAGTAGTTGCGCGAGATGACAGCGTCGAGGTTCTTGGTAACAACC 1592835 Query 106397 TTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTT 106456 || ||||| || ||||| || | | || | |||| |||| | |||| | Sbjct 1592834 TTGGTGATCTCGTGAAGCTTCTTGAAGTCGTAGGTGCCGTTCTCAAAGTCGACAAAGGCA 1592775 Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || ||||| | || || | ||||| || || ||| || | | |||||| | Sbjct 1592774 GGGAGGGCAAGGGAGGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCCGAGTACTCGATG 1592715 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || || | |||||| ||| || || || | | || ||||| ||| | Sbjct 1592714 ATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTTGACTTGCGG 1592655 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||| || ||||||||||||||| |||| || ||||| ||||| | || ||| || Sbjct 1592654 TTGGCAGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATG 1592595 Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGT-CCCTCCGCCTCGTA 106692 || ||| | | || | | || | |||| ||| ||| | ||||| |||||| Sbjct 1592594 GCGAACCAAAGCTTCTGAGCCTTG----ATGGTCTTGCGACCCTTGCCCTCACGCTCGTA 1592539 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACCTGGTGCCTTG 106750 ||| ||||||||| ||||||||||| | | | ||||||| || || || || | Sbjct 1592538 CTTCTCGTAGAGGGCCTCAAACTCCTC--CGAGTGGACGTCGGAAAGGCCGGGGCACTCG 1592481 Query 106751 TCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGA 106810 | || || | || | ||| | ||| | |||| || || |||||| ||||| | Sbjct 1592480 GCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGGCGCATGAAGAGGTCGGAG 1592421 Query 106811 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 106870 ||||| |||| | ||||| || | ||| |||| || | || ||||| || Sbjct 1592420 ATCCAGAGGGCGTAGAAGAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGA 1592361 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC- 106929 | || ||||| || | || || |||||||| ||||| || |||| || | | || Sbjct 1592360 AGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCA 1592301 Query 106930 ---CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 106986 | | | ||| | | || | ||||| || || ||||||| | |||| ||||| Sbjct 1592300 GGGCGCTTGTTGCC-ACCCTGGTCGACATAACGGGCAGTGGCGTCGTAGGCGCGGAGCAT 1592242 Query 106987 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTC 107044 |||| |||||| | || | || || || || ||| ||||| | | || | Sbjct 1592241 GGGAACAATACCGTTCGAATAGCCGTTGGTGCCAGCAATGTACGAGCCCT--TAGCACGA 1592184 Query 107045 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 107104 | | || ||||| | |||||||| || || ||| ||||| || || || | | Sbjct 1592183 ATGTTGTGAATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTG 1592124 Query 107105 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 107164 || || | ||||| |||| || ||||| ||||| |||||| ||||||||| ||| Sbjct 1592123 AGGGTGTCGTAGATGCCGTCAATCGAGTCATCCTTCATGGCGACAAGGAAGCACGACGAC 1592064 Query 107165 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 107224 ||||| || || ||||| || ||||||||||| || | ||||| |||| || Sbjct 1592063 ATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTAGGGGAGGCGTGGGTGAAGTAACGC 1592004 Query 107225 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATG 107284 | ||||| || ||| ||||| | ||| ||||||| || |||||||| || || Sbjct 1592003 TCCGACATGAGGTTGTAGGTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCAATC 1591944 Query 107285 GCCACACGCATAAACATGTATTGGGG 107310 | |||||||| | ||||| ||||| Sbjct 1591943 GAGACACGCATGATCATGTGCTGGGG 1591918 >seq6 Length=2644601 Score = 116 bits (128), Expect = 4e-21 Identities = 279/414 (67%), Gaps = 6/414 (1%) Strand=Plus/Minus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 ||| ||||| || | ||| |||||||||||| | |||| | | |||||| ||||| Sbjct 75839 GAGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGGTTGGCGTTCATGCCGAT 75780 Query 117156 GAGATT-ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCA 117214 ||| ||| || || || || || |||| | | |||||||| || ||||| || | Sbjct 75779 GAGCGAGACA-GGCAGGGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCCTCCTTGA 75721 Query 117215 CGATGGCGTGGATAGTTTCGGTAGTGGGT-CTATTACGCAAAGTCTTGAAGAGCTCCACG 117273 || || |||| | |||| |||||| | || | ||||| | Sbjct 75720 TAATCTTGTTGATAATGTCGGG-GTGGGTGCGGCGGCGGAGGTGGCCAAAGAGGAGGCAG 75662 Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || |||||||||||| || || || || || || || ||||| || || Sbjct 75661 GCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAGTCCG 75602 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||| | ||| | || | | ||| ||||| ||||||||||| Sbjct 75601 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAAGATG 75542 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAA 117452 ||||| || ||||| |||| || ||||||||||| || ||| || || | | Sbjct 75541 CCCTCGACGGCAGCAAAGGCAATGAGACGCTCGGCGAACGA-CGACTGTTCGTCGGTGAT 75483 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 ||| | ||||| | |||||||||| ||| || || | ||| | |||||| Sbjct 75482 CCAGCGGAGCGCCCAGTCGGCCTTCTTCTTAATGCAGGGAATAGTCTCGATGGC 75429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980608256240