Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6 107 1e-18 seq4 89.7 3e-13 seq5 86.0 4e-12 >seq6 Length=2644601 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| ||||| | || |||| || ||||| ||||||||||| Sbjct 27579 TCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAG 27520 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| |||||| Sbjct 27519 ATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTG 27460 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | ||| ||||| || || || |||||||| || Sbjct 27459 TCAATGGTGTCCGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACG 27400 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 27399 AAAATCTGCATA 27388 >seq4 Length=3045899 Score = 89.7 bits (98), Expect = 3e-13 Identities = 129/180 (72%), Gaps = 8/180 (4%) Strand=Plus/Minus Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865 |||||||||||| | || | || || ||||| || ||||| || || || || |||||| Sbjct 1996786 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGG 1996727 Query 34866 TCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCAC 34923 || | || | ||||||||||| |||||| ||||| | | ||||| | | Sbjct 1996726 TCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGAC----GTTGTCGATGGTGTC 1996671 Query 34924 CG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || |||| ||| ||||| || || ||||| ||||| || || |||||||| Sbjct 1996670 CGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1996611 >seq5 Length=2819049 Score = 86.0 bits (94), Expect = 4e-12 Identities = 130/183 (71%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||||||| | || | || || ||||| || ||||| || Sbjct 1774682 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 1774623 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| ||||| Sbjct 1774622 ATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC---- 1774567 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| | ||| || |||| ||| ||||| || ||||| || ||||| Sbjct 1774566 GTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTT 1774507 Query 34967 CAC 34969 || Sbjct 1774506 AAC 1774504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633497131728