Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 324 3e-83 seq6 302 8e-77 seq1 118 2e-21 >seq3 Length=3131490 Score = 324 bits (358), Expect = 3e-83 Identities = 1127/1744 (65%), Gaps = 51/1744 (3%) Strand=Plus/Minus Query 212688 AGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCT 212747 || || | ||| || ||||| ||| || ||||| | | | ||| || || | ||| Sbjct 1593557 AGGTGGATGTTGAGCGACTGCGACTGATCGATGAAGGCTCCACGGTCGGCAGCAAGGTCA 1593498 Query 212748 ATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGG 212807 |||| | |||| || | |||||| ||||||||| |||| |||| ||| || ||| Sbjct 1593497 ATGACGGCCTTCTGTGAAATCTCCCAGACGGTCTTGTAGATGGACTTGATGTCGTCGGGG 1593438 Query 212808 AAGCCGGGGATGTTCTGCACAGACCC-CCTGTGT--ATGGTCAGCTGCAGGCGCATGTCC 212864 | ||||| |||| ||| | || || || | | ||| |||||| ||| || Sbjct 1593437 ATTCCGGGAATGTGCTGGATCGAGCCACCCGAGGCAATGACGAGCTGCTT---CATCTCG 1593381 Query 212865 TCGTTCCAGAGGCCCCTGGTCTCCAGG-CACTTGACCAGGTGAGGGTTGACTATCTGGAA 212923 |||| |||||| || | | ||| ||| || || ||| ||| | |||||| Sbjct 1593380 TCGTCCCAGAGACCAAGGTTAATGAGGTCACG-GAGGAGCCAGGGGCAGACGACCTGGAA 1593322 Query 212924 GTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTT 212983 |||||| ||||| || | | | ||| | | |||||||||||||||| || |||||| Sbjct 1593321 GTCACCCGAGAGGACACGACGCGAGTAGAGCATCGAAGTGTAGGGCTCGAAGCACTCGTT 1593262 Query 212984 GTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCT 213043 || || ||||| | || ||| ||||||||||| || || ||||| ||| | Sbjct 1593261 CCAGCCAAGGATCTGCGAGGTCGAGGCAGTGGGCATGGGGGCAACGAGGAGCGAGTTGCG 1593202 Query 213044 CACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTC 213103 || ||||||| | || |||||||| |||||| ||| | | | || | Sbjct 1593201 GACACCGTGCTGGGAAATCTTCTCACGAAGCTCGTCCCAGTTCCAGAGGTCGGTGGGGAC 1593142 Query 213104 CTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTG 213163 || || ||| | ||| ||||| | |||| | | ||| ||||| Sbjct 1593141 A-CGGCC--------CCAGAGGTCGAACTGGAGCTTGCCCTCAGAAATGGGCGAGCCCTC 1593091 Query 213164 GTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTA 213223 ||| || | ||| ||| ||| ||||| |||||| |||| || || ||||||| Sbjct 1593090 GTACGAAGGGTACTTGCCCATCTCGACGGCCATCTCGCACGACGACTCGAGAGCAGCGTG 1593031 Query 213224 GTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCAT 213283 ||||||||| || || |||| |||||||| || || || || ||||||||| Sbjct 1593030 GTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGGCGAGCATCGGGCGAGTCGAAGGGCAT 1592971 Query 213284 CATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCT 213343 | | ||| | || || || |||||||| |||| |||| ||| | ||| | Sbjct 1592970 GCGGAGGGCCATGAAGGCGTCGGCAAGACCCTGGACACCGAGACCGACGGGGCGGTGGCG 1592911 Query 213344 CAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAG 213403 || ||| || || | ||| | |||||| |||||| ||||| || ||| Sbjct 1592910 CATGTTCGAGTTCCTGGCCTCGGGAACGGGGTAGTAGTTGCGCGAGATGACAGCGTCGAG 1592851 Query 213404 GTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCC 213463 ||| ||| | || ||||||| | | || | || |||| ||||| || Sbjct 1592850 GTTCTTGGTAACAACCTTGGTGATCTCGTGAAGCTTCT------TGAAGTCGTAGGTGCC 1592797 Query 213464 GTCCTGCA------CAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC 213517 || || | |||| |||| ||||| | | ||| |||||||| ||||| ||||| Sbjct 1592796 GTTCTCAAAGTCGACAAAGGCAGGGAGGGCAAGGGAGGCAAGGTTGCAGACGGCGACCTC 1592737 Query 213518 CTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAG 213577 | | | | | |||||| |||||||| ||||| |||||| | ||||||||| || Sbjct 1592736 GTCGGGGGCCGAGTACTCGATGATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAG 1592677 Query 213578 GTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGT 213637 || ||| ||||||||||| |||||||| ||||||||||||||| ||||| || || Sbjct 1592676 GTGCTGCTGGTTTGACTTGCGGTTGGCAGCGTCCTTGTAGAGCATGAAGGGGCCACCAGT 1592617 Query 213638 CTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGAC 213697 ||| ||||| | | || || | ||| || | | ||||||| | || | Sbjct 1592616 CTCGGTCTGGGCCTCGAGGATGGCGAACCAAAGCTTCTGAGCCTTGATG----GTCTTGC 1592561 Query 213698 AGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCC 213756 | | | | | | |||||||| |||||||| | | || || | || || Sbjct 1592560 GACCCTTGCCCTCACGCTCGTACTTCTCGTAGAGGGCCTCAAACTCCT---CCGAGTGGA 1592504 Query 213757 TGTCC---AGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGA 213813 ||| || || || || ||||| ||||||||| ||||||| ||||| | || Sbjct 1592503 CGTCGGAAAGGCCGGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGA 1592444 Query 213814 CTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCT 213873 | | ||||||| ||||| | || ||| || ||| ||| ||||| | || | || Sbjct 1592443 CACGGCGCATGAAGAGGTCGGAGATCCAGAGGGCGTAGAAGAGGTCACGGGCACGAACCT 1592384 Query 213874 CGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCT 213933 | ||| || ||| ||||| || || || ||||| |||| ||| |||||||| |||| Sbjct 1592383 CCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAGGGCT 1592324 Query 213934 CCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCA 213990 | | ||||||||||||||| || | || | ||||| |||||||| || | ||| Sbjct 1592323 CGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACATAACGGGCAG 1592264 Query 213991 CCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTA 214050 || | || ||| || | ||| || | ||||| || | |||||||| || || | Sbjct 1592263 TGGCGTCGTAGGCGCGGAGCATGGGAACAATACCGTTCGAATAGCCGTTGGTGCCAGCAA 1592204 Query 214051 TATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGG 214110 | |||||||| || | | |||| ||| ||| || || || ||||| ||||| Sbjct 1592203 TGTACGAGCCCTTAGCACGAATGTTGTGAATGTGGAGACCAATACCGCCGGCAGTCTTGG 1592144 Query 214111 AGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGT 214170 ||||| ||||||| | | | || || ||||||| | || |||||| | | | Sbjct 1592143 AGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATGCCGTCAATCGAGTCATCCTTCATGG 1592084 Query 214171 TCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGC 214230 | | |||||| ||| | |||||| || | || | |||||| || || ||| Sbjct 1592083 CGACAAGGAAGCACGACGACATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTAGGGG 1592024 Query 214231 TGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGT 214290 ||| ||| | | | | || | ||| |||||||||| | ||| | |||| Sbjct 1592023 AGGCGTGGGTGAAGTAACGCTCCGACATGAGGTTGTAGGTCTCAATGACCTTGTCAATGT 1591964 Query 214291 CGTGCTTGTGGAT--CTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGG 214348 || |||||| | | ||| || | ||| | |||||||||||| | ||| | | Sbjct 1591963 TGTCGCCGTGGATACCAATCGAG-ACA-CGCATGATCATGTGCTGGGGACGCTC--GGCG 1591908 Query 214349 TCCTTTGGGGCCCT--TGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAG 214406 |||| | | | ||| ||||| |||||||| || |||||||| || |||||| | Sbjct 1591907 ACCTTGCCGTCGATGCGGAGGAGGTACGAGCGCTCGAGGGTCTTGAAACCGAAGTAGTTG 1591848 Query 214407 TAGG 214410 |||| Sbjct 1591847 TAGG 1591844 >seq6 Length=2644601 Score = 302 bits (334), Expect = 8e-77 Identities = 566/824 (69%), Gaps = 22/824 (3%) Strand=Plus/Minus Query 47860 CTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGG 47919 ||| || ||||| | ||| |||| || |||||| ||||||||||| ||||||||||| Sbjct 75932 CTCGAAAAAGTTGGCCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAAGGGGTTGGT 75873 Query 47920 TGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGA 47978 | ||| |||| | | || ||| | | ||||| | || ||||| |||| | Sbjct 75872 CGAGTTGTACATCT-TCTCGTTGCCGAGGGCGACGAGCAGACGGTCGGCGACAAACTCAA 75814 Query 47979 TGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGA 48038 |||| | |||||||| || ||||||||| ||||| || || |||| |||| |||| Sbjct 75813 TGTACTGGCACATGAGGTTGGCGTTCATGCCGATGAGCGAGACAGGCAGGGCCTCGGTGA 75754 Query 48039 GAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT---AACG-CGGGACTCT 48094 | ||||||| ||| |||| ||||| ||| | ||||| || || | |||| Sbjct 75753 GGAACTCCTGCTCAATCTTGACGGCCTCCTTGATAATCTTGTTGATAATGTCGGG----- 75699 Query 48095 GAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCT 48154 | |||| | ||| || | | | || |||| | |||||||||||| |||| | || Sbjct 75698 GTGGGTGCG--GCGGCGGAGGTGGCCAAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCC 75641 Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| || ||||||| |||| ||||| ||| || ||||||| || | || ||| Sbjct 75640 TCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAGTCCGGGCATGAGGCCACGCTTCTTG 75581 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 |||||||| || | ||||| || || ||||||||||||||||| || || || || || Sbjct 75580 AGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAAGATGCCCTCGACGGCAGCAAAGGCA 75521 Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCC 48334 |||| | ||| |||| || | | | ||| | ||||||| ||||||||||| ||| Sbjct 75520 ATGAGACGCTCGGCGAACGACGACTGTTCGTCGGTGATCCAGCGGAGCGCCCAGTCGGCC 75461 Query 48335 TTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCG 48394 |||||||| ||||| || || ||||| |||||| |||||| | || || | | | Sbjct 75460 TTCTTCTTAATGCAGGGAATAGTCTCGATGGCCTTGAAGAGGTACTGGCGGCGGGCAGTG 75401 Query 48395 TCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATA 48451 || | ||||| |||| ||| | ||| |||| ||||| | ||||| || Sbjct 75400 TCGCGGATGTAGGTGTCGATGAGAAGC---GAGTAGGTCTCCGAGTGGATGTTCTCCATC 75344 Query 48452 GCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTC 48511 ||||||||| |||||||||| | ||||||| | ||| || || | |||| | | Sbjct 75343 ATGATCTGGAAGCCGTAGAAGGTCTTGGCCTCTGCAATCTGGACCTCGCCGCAGAAGCGC 75284 Query 48512 TCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTA 48571 || | || ||||| ||||| || || || || || || || ||||||||||| || | Sbjct 75283 TCGACGAGGTTCTCGTTGACGATTCCGTCCGACGCGGCGAAAAAGGCAAGGACGTGCTCG 75224 Query 48572 AGGAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAGG 48628 | || | ||||| || | | |||| || |||| | || | ||| | | ||| Sbjct 75223 ATAAAGTAACGCTCATTATCGTTGAGCTTGTTGTCCCAGTCGTGAAGGTCGGGGGCAAGG 75164 Query 48629 TCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTA 48672 | | || || | |||||||| ||||| | || || ||||| Sbjct 75163 TTAATCTCCTCGGCGGTCCAGAACGACGCCTGGGCCTTCTTGTA 75120 >seq1 Length=5305799 Score = 118 bits (130), Expect = 2e-21 Identities = 244/358 (68%), Gaps = 20/358 (6%) Strand=Plus/Plus Query 48001 GTTCATGCCTATGAGGG-ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCA 48059 |||||| || ||||| | ||||||| | || | |||||| ||||||||||| || | | Sbjct 776144 GTTCATTCCAATGAGAGCACACGGG-AGCGCGTCTGTGAGGAACTCCTTCTCAATGTCGA 776202 Query 48060 CGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGG 48119 | ||||| | ||||| | ||| ||| || | | | | |||||||| Sbjct 776203 CCGCTTCGCGTACAATTGTGTAAAC------CTCATCCGGATCG---CACCGGTGCTTGA 776253 Query 48120 CATAG------AGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCA 48173 || | |||| || ||||||||| |||| | ||||||||| ||| |||||| Sbjct 776254 GATGGCCGTACAGCAAACACGCAAAGTCCGTGTGTATGCCTTCGTCGCGGGATATGAGCT 776313 Query 48174 CGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGA 48233 |||| |||||| ||| || |||| | || | || ||||||||||| || || || | Sbjct 776314 CGTTTGAGAAGGTGAGTCCGCGCATCAAACCACGCTTCTTGAGCCAGAAGATGGCGGCAA 776373 Query 48234 AAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAG 48293 | || || || ||||||||||| || || ||| ||||| |||| | | | || | Sbjct 776374 ACGATCCCGAAAAGAAGATGCCTTCAACGCACGCAAACGCAATGAGAC-GTGTGCGGA-- 776430 Query 48294 AAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 | | ||| ||||| ||| | ||||||||||| |||||||| |||||| || Sbjct 776431 ACGGCATCTCGTCTGTGATGTATTTCAGCGCCCAGTCGGCCTTCTTGCGGATGCACGG 776488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532497251840