Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 338 1e-87 seq6 194 3e-44 >seq3 Length=3131490 Score = 338 bits (374), Expect = 1e-87 Identities = 824/1235 (67%), Gaps = 45/1235 (4%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 || |||||||||||||||||||| |||||| |||||| || | || ||||| || Sbjct 1593041 AGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAG-CTGGCGAGCATCGGGCGA 1592983 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 ||||||||| || || | ||| ||||||| || ||||| || |||| ||||| Sbjct 1592982 GTCGAAGGGCATGCGGAGGGCCATGAAGGCGTCGGCAAGACCCTGGACACCGAGACCGAC 1592923 Query 221539 GGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGAT 221598 ||| | ||| | | |||| || || || || ||||| || ||||| ||| Sbjct 1592922 GGGGCGGTGGCGCATGTTCGAGTTCCTGGCCTCGGGAACGGGGTAGTAGTTGCGCGAGAT 1592863 Query 221599 CAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAA 221658 | | || ||||||| || | || || | |||| ||||||| |||| Sbjct 1592862 GACAGCGTCGAGGTTCTTGGTAACAACCTTGGTGATCTCGTGAAGCTTCT------TGAA 1592809 Query 221659 CACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718 | | | ||||| | | | || ||||| || ||||||| | ||| || Sbjct 1592808 GTCGTA---GGTGCCGTTCTCAAAG---TCGACAAAGGCAGGGAGGGCAAGGGAGGCAAG 1592755 Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCT 221778 ||| || ||||| |||||||| | | |||| |||||||| || ||||||||| Sbjct 1592754 GTTGCAGACGGCGACCTCGTCGGGGGCCGAGTACTCGATGATCTCAGTGCAGAGGTTGGA 1592695 Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAG 221838 |||||||||| || ||||| | || || |||||||| |||||||||||||||||||| Sbjct 1592694 CGACTTGATGGTGCCGAGGTGCTGCTGGTTTGACTTGCGGTTGGCAGCGTCCTTGTAGAG 1592635 Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-G 221897 ||| ||||| || |||||||| ||| ||| | || || | ||| || | |||| | Sbjct 1592634 CATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATGGCGAACCAAAGCT-TCTGAG 1592576 Query 221898 CGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 | | | ||| | |||| | ||| |||| ||| || ||| || || Sbjct 1592575 CCTTGATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTTCTC-------GTAGAGGGCC 1592523 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 | |||||| || || | ||| ||||| || ||| |||||| ||||| || Sbjct 1592522 T--CAAACTCCTCCGAGTGGACGTCGGAAAGGCCGGGGCACTCGGCGGGGCACATGAGGG 1592465 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 |||||| || | | | ||| | ||||||||||||| | |||||| || || | | Sbjct 1592464 TCCAGTCACCGTCGGCCTCGACACGGCGCATGAAGAGGTCGGAGATCCAGAGGGCGTAGA 1592405 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 |||| || | || || ||||||| ||||| ||| || | || || | || || | Sbjct 1592404 AGAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAAGTCGA 1592345 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | | ||| |||||||| ||||| || |||| ||| | || || || ||||||||||||| Sbjct 1592344 AGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCAC 1592285 Query 222192 CCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250 |||| || || || ||| | ||| | || ||| || | || || | ||||| Sbjct 1592284 CCTGGTCGAC-ATAACGGGCAGTGGCGTCGTAGGCGCGGAGCATGGGAACAATACCGTTC 1592226 Query 222251 GATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT---ACTG-GCAGA 222306 || ||||||||||| |||||||| || || | | ||| | || | ||| Sbjct 1592225 GAATAGCCGTTGGTGCCAGCAATGTACGAGCCCTTAGCACGAATGTTGTGAATGTGGAGA 1592166 Query 222307 CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGAT 222366 | | ||||| ||||| || |||||| ||||||| ||||||| ||||| ||| Sbjct 1592165 C----CAATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGAT 1592110 Query 222367 GCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGT 222426 ||| || || ||||| ||||| | | | || || || ||||||||||| | | || Sbjct 1592109 GCCGTCAATCGAGTCATCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTGGGG 1592050 Query 222427 GGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATC 222486 || || |||||| || || || || |||||| || ||||| | | ||||| || | Sbjct 1592049 GGTACCGGCGTTGAAGAGGGTAGGGGAGGCGTGGGTGAAGTAACGCTCCGACATGAGGTT 1591990 Query 222487 GTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTA 222546 ||| ||||| | ||| || | |||||||| ||||| || || | | | |||| Sbjct 1591989 GTAGGTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCAATCGAGACACGCATGAT 1591930 Query 222547 CATGTACTGGGGCCTCTCCACAGGACCCT--TGGAGCTGGAGAGCAGGTACGATTTTTCC 222604 ||||| |||||| | ||| | |||| | | | || ||| |||||||| || Sbjct 1591929 CATGTGCTGGGGACGCTCGGC--GACCTTGCCGTCGATGCGGAGGAGGTACGAGCGCTCG 1591872 Query 222605 AGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639 || |||||||| || ||||||||| | ||||||| Sbjct 1591871 AGGGTCTTGAAACCGAAGTAGTTGTAGGCAAAGTC 1591837 >seq6 Length=2644601 Score = 194 bits (214), Expect = 3e-44 Identities = 544/835 (65%), Gaps = 22/835 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| || | ||||||||||| || || |||||||||||| |||||| | || Sbjct 75108 ATCTGGCAGTTCTACAAGAAGGCCCAGGCGTCGTTCTGGACCGCCGAGGAGATTAACCTT 75167 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 ||| ||| | ||| |||| || |||| | | | | |||| | ||| || Sbjct 75168 GCCCCCGACCTTCACGACTGGGACAACAAGCTCAA--CGATAATGAGCGTTACTTTATCG 75225 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 || |||| | || || || || || || || || || || |||||||| || |||| Sbjct 75226 AGCACGTCCTTGCCTTTTTCGCCGCGTCGGACGGAATCGTCAACGAGAACCTCGTCGAGC 75285 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | ||| | | || || ||| | ||||||||| |||||||| |||||||| | Sbjct 75286 GCTTCTGCGGCGAGGTCCAGATTGCAGAGGCCAAGACCTTCTACGGCTTCCAGATCATGA 75345 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACG 25768 | || || | ||||| ||| || | |||||| || || ||||| ||| Sbjct 75346 TGGAGAACATCCACTCGGAGACCTACTC---GCTTCTCATCGACACCTACATCCGCGACA 75402 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 ||| | | || || ||||||||| || ||| |||| |||| ||||| Sbjct 75403 CTGCCCGCCGCCAGTACCTCTTCAAGGCCATCGAGACTATTCCCTGCATTAAGAAGAAGG 75462 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | ||||| | ||||||| | | | | |||| | |||||| || | | Sbjct 75463 CCGACTGGGCGCTCCGCTGGATCACCGACGAACAGTCGTCGTTCGCCGAGCGTCTCATTG 75522 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCA 25948 |||||||||| || ||||||||||| ||| || ||||| || ||||||||||||||| Sbjct 75523 CCTTTGCTGCCGTCGAGGGCATCTTCTTCTCGGGGTCGTTCGCCTCCATCTTCTGGCTCA 75582 Query 25949 AGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || || || ||||||||| || || || |||||||||||| | ||||||| Sbjct 75583 AGAAGCGTGGCCTCATGCCCGGACTCACATTCTCGAACGAGCTCATCTCGCGCGACGAGG 75642 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC-ACAAACCTTCT 26067 ||||||||| || ||||||||||| |||| |||||| | | || | ||| | Sbjct 75643 GTCTCCACACCGACTTTGCCTGCCTCCTCT---TTGGCCACCTCCGCCGCCGCACCCAC- 75698 Query 26068 CAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 | || | || ||| || ||||| ||||| || |||| ||| ||||||| | Sbjct 75699 CCCGACATTATCAACAAGATTATCAAGGAGGCCGTCAAGATTGAGCAGGAGTTCCTCACC 75758 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 | ||||||||| || |||||| |||| ||||||||| Sbjct 75759 GAGGCCCTGCCTGTCTCGCTCATCGGCATGAACGCCAACCTCATGTGCCAGTACATTGAG 75818 Query 26188 TATGTGGCCGACCATCTGCT-GT-GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTA 26245 | ||| ||||||| |||||| || ||| || || || | | |||| || | | Sbjct 75819 TTTGTCGCCGACCGTCTGCTCGTCGCC--CTCGGCAACGAGAAGATGTACAACTCGACCA 75876 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGA 26300 |||| |||||||| ||||| | || ||| || | || ||| ||||||| || || Sbjct 75877 ACCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGGCCAACTTTTTCGA 75931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844498125440