Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3 181 1e-40 seq6 116 4e-21 >seq3 Length=3131490 Score = 181 bits (200), Expect = 1e-40 Identities = 677/1049 (65%), Gaps = 33/1049 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| ||| | || || |||||||| || ||||||| ||| Sbjct 1591918 CCCCAGCACATGATCATGCGTGTCTCGATTGGTATCCACGGCGACAACATTGACAAGGTC 1591977 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| ||| || ||||| | || |||| ||||| | || ||||||||| Sbjct 1591978 ATTGAGACCTACAACCTCATGTCGGAGCGTTACTTCACCCACGCCTCCCCTACCCTCTTC 1592037 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || ||||| || || |||||||| ||||||||| |||||| ||||| ||| Sbjct 1592038 AACGCCGGTACCCCCCACCCCCAGATGTCGTCGTGCTTCCTTGTCGCCATGAAGGATGAC 1592097 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || || |||| ||||| | || || | | || || || ||||| ||| || || Sbjct 1592098 TCGATTGACGGCATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACTGCCGGC 1592157 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACAA 75509 |||||||| | ||||| || | | | || | | ||||| ||| || || | Sbjct 1592158 GGTATTGGTCTCCACATTCACAACATTCGTGCTA--AGGGCTCGTACATTGCTGGCACCA 1592215 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || | || | |||||| |||| ||||| |||| | ||||||| || || |||| Sbjct 1592216 ACGGCTATTCGAACGGTATTGTTCCCATGCTCCGCGCCTACGACGCCACTGCCCGTTATG 1592275 Query 75570 TAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 | | | || | ||| ||| || || | || ||||| | || || ||||| Sbjct 1592276 TCGA-CCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGGCAC 1592334 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 ||||| || | || ||||| || | || ||||| || | || |||| ||| Sbjct 1592335 GCCGACGTCTTCGACTTCCTCGACCTTCGCAAGAACCACGGCAAGGAGGAGGTTCGTGCC 1592394 Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | || ||||| | |||| ||||| | ||||| |||||| || || |||| | Sbjct 1592395 CGTGACCTCTTCTACGCCCTCTGGATCTCCGACCTCTTCATGCGCCGTGTCGAGGCCGAC 1592454 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG--CGGTGGGTG 75803 ||| | ||| | || | || || | | || || || || ||||||| | | | | Sbjct 1592455 GGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTTTCCGACGTCCACTCG--G 1592512 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGA---AGAGG---AGGGTAGAGCCAATGCGA 75857 |||||||||| ||||||||| ||||| || |||| ||||| | ||| || Sbjct 1592513 AGGAGTTTGAGGCCCTCTACGAGAAGTACGAGCGTGAGGGCAAGGGTCG---CAA---GA 1592566 Query 75858 CTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916 | | | || | | || | ||||| || || ||| | | ||||| |||||||| Sbjct 1592567 CCAT-CAAGGCTCAGAAGCTTTGGTTCGCCATCCTCGAGGCCCAGACCGAGACTGGTGGC 1592625 Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976 || | ||||| |||||||| ||| ||| ||| ||||| || | | || || Sbjct 1592626 CCCTTCATGCTCTACAAGGACGCTGCCAACCGCAAGTCAAACCAGCAGCACCTCGGCACC 1592685 Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036 |||||| || || || ||||| || || | |||||| | | || ||| || Sbjct 1592686 ATCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCGGCCCCCGACGAGGTCGCC 1592745 Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTT 76096 || ||||| | || || | ||||| || | |||| | |||| |||| | Sbjct 1592746 GTCTGCAACCTTGCCTCCCTTGCCCTCCCTGCCTTTGTCGACTTTGAGAACGGCACCTAC 1592805 Query 76097 GATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATT 76156 || | | || ||||| || ||||| ||| |||||||||| || || || ||||| Sbjct 1592806 GACTTCAAGAAGCTTCACGAGATCACCAAGGTTGTTACCAAGAACCTCGACGCTGTCATC 1592865 Query 76157 GACAGAAATTTTTATCCCGTT---GAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213 | || | || |||||| ||| || | || || || ||||| ||| | || Sbjct 1592866 TCGCGCAACTACTACCCCGTTCCCGAG---GCCAGGAACTCGAACATGCGCCACCGCCCC 1592922 Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGA 76242 | ||| | ||||| || ||||| || || Sbjct 1592923 GTCGGTCTCGGTGTCCAGGGTCTTGCCGA 1592951 >seq6 Length=2644601 Score = 116 bits (128), Expect = 4e-21 Identities = 279/414 (67%), Gaps = 6/414 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | ||| | || || ||| |||||||||| | ||||| | ||| | | Sbjct 75429 GCCATCGAGACTATTCCCTGCATTAAGAAGAAGGCCGACTGGGCGCTCCGCTGGATCACC 75488 Query 65056 -ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 || || ||| || ||||||||||| || |||| ||||| || ||||| ||||| Sbjct 75489 GACGAACAGTCG-TCGTTCGCCGAGCGTCTCATTGCCTTTGCTGCCGTCGAGGGCATCTT 75547 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| ||||| ||| | | || | ||| | |||||||| || |||||||| || || Sbjct 75548 CTTCTCGGGGTCGTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGACT 75607 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234 ||||| || || || || || || || |||||||||||| || |||||| Sbjct 75608 CACATTCTCGAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCT 75667 Query 65235 GCTCTTCAAGACTTTGCGTAATAG-ACCCACTACCGAAACTATCCACGCCATCGTGAAAG 65293 ||||| | || | |||||| |||| | |||| || || | || | Sbjct 75668 CCTCTTTGGCCACCTCCGCCGCCGCACCCAC-CCCGACATTATCAACAAGATTATCAAGG 75726 Query 65294 AGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGT 65352 |||| || |||||||| | | |||| || || || || || ||| |||||||| Sbjct 75727 AGGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCCCTGCC-TGTCTCGCTCATCGGC 75785 Query 65353 ATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 |||||| | | |||| | |||||||||||| ||| | || ||||| ||| Sbjct 75786 ATGAACGCCAACCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTC 75839 Score = 98.7 bits (108), Expect = 1e-15 Identities = 215/320 (67%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 175182 CCGCTTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGA 175241 ||||||| |||| || | || || |||| ||||| || || || ||| |||| | Sbjct 1387823 CCGCTTCCGTGACGTCGCCGGTATGGACGAGGCCAAGGAGGAGATTATGGAGTTTGTCAA 1387764 Query 175242 TTTTCTCAAGCAACCCGAGAGATATTTTGGAAGT--GGTGCCAAGATCCCCCGAGGCGCC 175299 || |||||| | |||| | || |||| ||||||||||||||||| || ||| Sbjct 1387763 GTTCCTCAAGGAGCCCGCAAAGTACGA--GAAGCTCGGTGCCAAGATCCCCCGTGGTGCC 1387706 Query 175300 CTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAA 175359 ||||| | ||| || |||||||| ||||||||||||||| |||| ||| || || Sbjct 1387705 ATTCTCTCTGGTCCCCCCGGTACGGGTAAGACCCTCCTCGCCAAGGCCACCGCCGGCGAG 1387646 Query 175360 TCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTG 175419 | || ||||| ||| | | || | | | || || |||||||| || ||||| Sbjct 1387645 GCCAAGGTCCCCTTCCTTTCGGTTTCCGGTTCCGAGTTCGTTGAGATGTTCGTCGGTGTC 1387586 Query 175420 GGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTC 175479 ||| || | || || || ||||| | | ||| | | || || || || || Sbjct 1387585 GGTCCCTCGCGTGTCCGTGACCTCTTCGCCACTGCCAGGAAGAACGCCCCCTGCATCATC 1387526 Query 175480 TTCATTGATGAGATTGATGC 175499 ||| | || |||||||| || Sbjct 1387525 TTCGTCGACGAGATTGACGC 1387506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569406114880