Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 136 1e-26 seq3 114 4e-20 >seq1 Length=5305799 Score = 136 bits (150), Expect = 1e-26 Identities = 207/293 (71%), Gaps = 4/293 (1%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||| || || | | | | ||| ||||| ||||| | |||||||||||| |||||||| Sbjct 2655274 ATCGTAGCCGACCTTGAGGTCCTCCATGGCCTTGACGAGACGACGCTGAATGTAACCAGT 2655333 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || || || || ||||| || ||||| |||||||||||||||| |||||||| Sbjct 2655334 CTCGGCAGTCTTGACGGCGGTATCGATCAGACCCTCACGACCACCCATAGCGTGGAAGAA 2655393 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | ||| | ||| || || | | | ||| |||| ||||||||||||| |||||| Sbjct 2655394 GAACTCCTGAGGTGTGAGACCACGGAGGTACGAGTTCTCGACGAAACCACGCGACTCGGG 2655453 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACG 302792 || |||| ||||| ||||| ||||| || | || | ||| | || ||||| Sbjct 2655454 TCCATAGTCGTCCTTGGCGAAGTGGGGCAGCGTACGGTGGCGGAAACCGAACGGAATACG 2655513 Query 302793 CTTTCCATCAACGTTCTGCTGTCCCAGGCA--CGAAATCATCTGCGAAATATT 302843 |||||| || || ||||||| || | || || | ||| |||||||| || Sbjct 2655514 CTTTCCTTCGACAATCTGCTGACCGACACATCCGGA--CATTTGCGAAATGTT 2655564 Score = 87.8 bits (96), Expect = 5e-12 Identities = 264/402 (66%), Gaps = 8/402 (2%) Strand=Plus/Plus Query 59981 GTGCTAAAACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGG 60040 ||||| | || ||||| ||||| | | || |||| ||| | ||| ||||| || ||| Sbjct 1241242 GTGCTCCATCCCGTACCGATACCATCGGCGCCGTTGACAAGCACCATGGGGATGATGGGG 1241301 Query 60041 ATATAATAAACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCG 60100 | || || || ||||| | || | ||||| || | ||| | | || | |||| Sbjct 1241302 AGGTAGTACACAGGCTCGATACGCTGGCCATCCTCGATCTGGTAGTTGAGAATGTCGTCG 1241361 Query 60101 TCAATTTCGGGAAATATAGCCCGAGTAAT-CTTGGATAATTGTGTGAAAATATACCTCTC 60159 || | | | || | || ||||| || | ||| | || |||||||| || | | Sbjct 1241362 TCGTCCTTGTGCAAGAGGGCGCGAGTCATGCGCGGA-AGTTCAGTGAAAATGTAACGAGC 1241420 Query 60160 GGATGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAG 60219 | ||||||||||| ||||| | || || || ||||||||| | || || || Sbjct 1241421 GCTAGCTGCGTCCTTTCCACCAGACATGCGAGTACCGAATTGTCCGATCGGGGCGAGCAG 1241480 Query 60220 ATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACT 60279 || |||||||| ||| || || || ||||||||||| || || | | || || Sbjct 1241481 GTTGATGTTGTTGCTGCCGACAAAGTTCTGAGCGAGACCGACGATGGTCGACTGCAAGCT 1241540 Query 60280 GGCTTCACCGTGATGATATCCAGAATGTTCT--GAAACATATCCACTGAATTGTGCGACT 60337 | |||||||| || || ||| |||||| || | || ||||| | ||| |||| Sbjct 1241541 CACCTCACCGTGGTGGTACGCAG--TGTTCTCGGAGATGTAGCCACTAAGCTGTCCGACC 1241598 Query 60338 TTAATTTCGGAGTGGAGTTTTTTCTTGAA--CGCCGAATATA 60377 || ||||| | ||| || ||||||| |||||| ||| Sbjct 1241599 TTGATTTCCTTGGTGAGGTTCCTCTTGAAGCAGCCGAAGATA 1241640 >seq3 Length=3131490 Score = 114 bits (126), Expect = 4e-20 Identities = 346/534 (65%), Gaps = 3/534 (1%) Strand=Plus/Minus Query 155969 CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGG 156028 |||||| | |||||| ||||| || || || | ||| || | || | || || Sbjct 1592385 CTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAGGG 1592326 Query 156029 CTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGC 156085 ||| || || || ||||| |||| | |||| |||||||| || ||||| || || Sbjct 1592325 CTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACATAACGGGC 1592266 Query 156086 AGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCG 156145 ||| | | || | | ||||| |||| |||||| || ||| ||| ||||| || Sbjct 1592265 AGTGGCGTCGTAGGCGCGGAGCATGGGAACAATACCGTTCGAATAGCCGTTGGTGCCAGC 1592206 Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTT 156205 ||| | ||| || | |||| || ||||| || || |||||||| || | || Sbjct 1592205 AATGTACGAGCCCTTAGCACGAATGTTGTGAATGTGGAGACCAATACCGCCGGCAGTCTT 1592146 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 || || || ||||| ||| | || | | | || || ||||| || ||||| | ||| Sbjct 1592145 GGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATGCCGTCAATCGAGTCATCCTTCAT 1592086 Query 156266 TGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 | | || ||||||| | || || | || || || |||||||| || ||||| Sbjct 1592085 GGCGACAAGGAAGCACGACGACATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTAGG 1592026 Query 156326 TGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAG 156385 | || || | || || | ||||| | ||| ||||| | | ||| |||| Sbjct 1592025 GGAGGCGTGGGTGAAGTAACGCTCCGACATGAGGTTGTAGGTCTCAATGACCTTGTCAAT 1591966 Query 156386 ATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAAT 156445 || ||||| |||| || ||||| | ||| ||| ||||| |||||||| | | Sbjct 1591965 GTTGTCGCCGTGGATACCAATCGAGACACGCATGATCATGTGCTGGGGACGCTCGGCGAC 1591906 Query 156446 CACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | || || || || || ||||| | ||| || || || || || ||||| || Sbjct 1591905 CTTGCCGTCGATGCGGAGGAGGTACGAGCGCTCGAGGGTCTTGAAACCGAAGTA 1591852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817109700762