Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01]
26 sequences; 30,616,633 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq6 122 6e-23
seq5 113 3e-20
seq4 104 2e-17
>seq6
Length=2644601
Score = 122 bits (134), Expect = 6e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | || ||||||||||||||| ||||| || || |||| ||||
Sbjct 27600 AGGACGAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCC 27541
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||||||||| ||||| || || |||||||| | || | |||||||||||
Sbjct 27540 TCGAGCTGCTTTCCGGCAAAGATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 27481
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | |||||| |||| ||| ||||||
Sbjct 27480 TGGATCTTCGCCTTGACGTTGTCAATGGTGTCCGACGACTCGACCTCAAGGGTGATGGTC 27421
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || || ||||| || || ||||||||
Sbjct 27420 TTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 27389
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | ||| ||||||||| ||||| ||||| || ||| | || | ||
Sbjct 27372 AGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCC 27313
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| |||||||| || || || |||||||| | || | |||||||||||
Sbjct 27312 TCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 27253
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || || |||||| |||| ||| ||||||
Sbjct 27252 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTC 27193
Query 34946 TTTCCCGTGAGG 34957
|| ||||| |||
Sbjct 27192 TTGCCCGTAAGG 27181
>seq5
Length=2819049
Score = 113 bits (124), Expect = 3e-20
Identities = 145/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | ||| ||||||||| ||||| |||||||| ||| |||| | ||
Sbjct 1774703 AGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 1774644
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| ||||||||||| || || |||||||| | || | |||||||||||
Sbjct 1774643 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1774584
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | ||| || || | ||| ||||||
Sbjct 1774583 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTC 1774524
Query 34946 TTTCCCGTGAGGGTCTTTAC 34965
|| ||||| |||||||| ||
Sbjct 1774523 TTGCCCGTAAGGGTCTTAAC 1774504
>seq4
Length=3045899
Score = 104 bits (114), Expect = 2e-17
Identities = 129/177 (73%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861
|||||||| ||| |||| | || || || ||||| ||||||||||| || || ||||||
Sbjct 1996786 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGG 1996727
Query 34862 TCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTG 34921
|| | || | ||||||||||| | || || |||||| | || | ||
Sbjct 1996726 TCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAA 1996667
Query 34922 GCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| |||||| || | ||| |||||||| || ||||||||||| || || |||||||||
Sbjct 1996666 GACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATG 1996610
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692696796094
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |